Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001065`

染色体: Chr08 坐标: 8217138-8223330 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001065`
名称	SmilChr08G001065
描述	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	8217138 - 8223330 / `-`

ID 对照

NCBI Gene ID	`LOC131000651`
GeneID	`131000651`
locus_tag	`-`
NCBI Name	`LOC131000651`
原始查询	`LOC131000651`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic
产物	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin)%2C chloroplastic
Arabidopsis	`AT5G60600` (HDS) 4-hydroxy-3-methylbut-2-enyl diphosphate synthase [Source:NCBI gene (formerly Entrezgene);Acc:836181] identity=84.2; qcov=1; evalue=0; confidence=high
Rice	`Os02g0603800` (OsHDS) - identity=83.1; qcov=1; evalue=0; confidence=high
GO	GO:0005506 (iron ion binding); GO:0009507 (chloroplast); GO:0016114 (terpenoid biosynthetic process); GO:0019288 (isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway); GO:0046429 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity (ferredoxin))
KEGG	smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF04551 (GcpE); PF26540 (GcpE_C)
InterPro	-
eggNOG	-
NR	GeneID:131000651

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057782647.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057782647.1`
3	Mitochondrion	线粒体	0.20000	`XP_057782647.1`
4	Nucleus	细胞核	0.00000	`XP_057782647.1`
5	Chromosome	染色体	0.00000	`XP_057782647.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:8217844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr8:8218015`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B139,B42,B43
`Chr8:8218066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B43,B48,C56,D1
`Chr8:8218072`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B43,B48,C56,D1
`Chr8:8218090`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B43,B48,B57,C56,D1
`Chr8:8218469`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr8:8218470`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr8:8218670`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B62,C10
`Chr8:8218852`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:8218891`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr8:8219328`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B108,B14,B41,B63
`Chr8:8219732`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,C65

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782647.1

742 aa

371

742

GcpE

GcpE_C

PF04551 GcpE 89-358 aa PF26540 GcpE_C 642-730 aa

XP_057782648.1

742 aa

371

742

GcpE

GcpE_C

PF04551 GcpE 89-358 aa PF26540 GcpE_C 642-730 aa

XP_057782649.1

742 aa

371

742

GcpE

GcpE_C

PF04551 GcpE 89-358 aa PF26540 GcpE_C 642-730 aa

XP_057782650.1

742 aa

371

742

GcpE

GcpE_C

PF04551 GcpE 89-358 aa PF26540 GcpE_C 642-730 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782647.1`	Pfam	`PF04551`	GcpE	Domain	89	358	8e-89	298.1	GcpE TIM-barrel domain
`XP_057782647.1`	Pfam	`PF26540`	GcpE_C	Domain	642	730	1.6e-24	86.4	GcpE protein C-terminal domain
`XP_057782648.1`	Pfam	`PF04551`	GcpE	Domain	89	358	8e-89	298.1	GcpE TIM-barrel domain
`XP_057782648.1`	Pfam	`PF26540`	GcpE_C	Domain	642	730	1.6e-24	86.4	GcpE protein C-terminal domain
`XP_057782649.1`	Pfam	`PF04551`	GcpE	Domain	89	358	8e-89	298.1	GcpE TIM-barrel domain
`XP_057782649.1`	Pfam	`PF26540`	GcpE_C	Domain	642	730	1.6e-24	86.4	GcpE protein C-terminal domain
`XP_057782650.1`	Pfam	`PF04551`	GcpE	Domain	89	358	8e-89	298.1	GcpE TIM-barrel domain
`XP_057782650.1`	Pfam	`PF26540`	GcpE_C	Domain	642	730	1.6e-24	86.4	GcpE protein C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057926666.1
GTCAGTTGAAAAAACCAGAGGCAGAAATAAATATTTATGGCTACTAATATGTGGAAATTGAAGATGCTGATGAACTGAATTTTGTCTGCTTATTATCAAATAGGTGTAGCTTTCATAATCCTTCGCCATTTCGAGCAGGAGGGTGGAATTTGGTACTTTGTGGAGTAAAATGGCGACTGGAGCTGTTCCGGCTTCATTTACCGGTCTCAAAAGCAGGGATCATCGTGGCTTGGGGTTTGGAAAGAGTTCCGATTTTGTTA...

XM_057926664.1
AGAAATAAATATTTATGGCTACTAATATGTGGAAATTGAAGATGCTGATGAACTGAATTTTGTCTGCTTATTATCAAATAGGTGTAGCTTTCATAATCCTTCGCCATTTCGAGCAGGTATAAAACCTCTGAGTTGGCTTCACTATCTTTCTGAATTTTCAGCTCCAGATAATTTCCATTTCAAATTCCATCCACCACCAGTTCATCTCTTTCTCGATTCTTCCTTTTGGCTCATTAGTGCTAATCGTTTTGTCATTTTAC...

CDS

4 records

下载 CDS FASTA

LOC131000651
ATGGCGACTGGAGCTGTTCCGGCTTCATTTACCGGTCTCAAAAGCAGGGATCATCGTGGCTTGGGGTTTGGAAAGAGTTCCGATTTTGTTAGAGTTTCTGACTTGCAAAGGGTTAAGTTTGGAAGGAGCAAAGTTGCAGTGATCAGAAACTCGAACAACCCCGGTTCAGAAACTGTTGAACTCAAGCCAGCATCAGAGGGAAGCCCACTGTTAGTTCCCAGGCAGAAGTATTGTGAATCCATACACAAGACAGTCCGGAG...

Protein

4 records

下载 Protein FASTA

XP_057782647.1
MATGAVPASFTGLKSRDHRGLGFGKSSDFVRVSDLQRVKFGRSKVAVIRNSNNPGSETVELKPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDIAGTVEQVMRIADQGADLVRITVQGRKEADACFEIKNSLVQKNYNIPLVADIHFAPPVAMRVAECFDKIRVNPGNFADRRAQFEQLEYTDDDYQKELEHIEKVFSPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMV...

XP_057782648.1
MATGAVPASFTGLKSRDHRGLGFGKSSDFVRVSDLQRVKFGRSKVAVIRNSNNPGSETVELKPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDIAGTVEQVMRIADQGADLVRITVQGRKEADACFEIKNSLVQKNYNIPLVADIHFAPPVAMRVAECFDKIRVNPGNFADRRAQFEQLEYTDDDYQKELEHIEKVFSPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGDSPRGMV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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