Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001067`

染色体: Chr08 坐标: 8229523-8233838 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001067`
名称	SmilChr08G001067
描述	ruvB-like protein 1
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	8229523 - 8233838 / `-`

ID 对照

NCBI Gene ID	`LOC131000652`
GeneID	`131000652`
locus_tag	`-`
NCBI Name	`LOC131000652`
原始查询	`LOC131000652`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ruvB-like protein 1
产物	ruvB-like protein 1
Arabidopsis	`AT5G22330` (RIN1) P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:832293] identity=91; qcov=1; evalue=0; confidence=high
Rice	`Os07g0178900` (OsRuvBL1b) - identity=91.4; qcov=1; evalue=0; confidence=high
GO	GO:0000492 (box C/D snoRNP assembly); GO:0000812 (Swr1 complex); GO:0003678 (DNA helicase activity); GO:0005524 (ATP binding); GO:0006338 (chromatin remodeling); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0016573 (GO:0016573); GO:0016887 (ATP hydrolysis activity); GO:0031011 (Ino80 complex); GO:0035267 (NuA4 histone acetyltransferase complex); GO:0097255 (R2TP complex)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00004 (AAA); PF05496 (RuvB_N); PF06068 (TIP49); PF17856 (TIP49_C)
InterPro	-
eggNOG	-
NR	GeneID:131000652

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057782651.1`
2	Cytosol	细胞质基质	1.00000	`XP_057782651.1`
3	Nucleus	细胞核	0.40000	`XP_057782651.1`
4	Nucleoplasm	核质	0.40000	`XP_057782651.1`
5	Melanosome	Melanosome	0.20000	`XP_057782651.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:8230043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:8231108`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr8:8231600`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C15
`Chr8:8231968`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A8,B129,B64,B79,C15
`Chr8:8233031`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A22,B30,B33,B70
`Chr8:8233094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B2,B46,C14,C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782651.1

455 aa

228

455

TIP49

RuvB_N

AAA

TIP49_C

PF06068 TIP49 14-365 aa PF05496 RuvB_N 38-91 aa PF00004 AAA 66-115 aa PF17856 TIP49_C 373-438 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782651.1`	Pfam	`PF06068`	TIP49	Domain	14	365	3.8e-166	553.2	TIP49 P-loop domain
`XP_057782651.1`	Pfam	`PF05496`	RuvB_N	Domain	38	91	4.7e-10	40.2	Holliday junction DNA helicase RuvB P-loop domain
`XP_057782651.1`	Pfam	`PF00004`	AAA	Domain	66	115	4.7e-11	44.0	ATPase family associated with various cellular activities (AAA)
`XP_057782651.1`	Pfam	`PF17856`	TIP49_C	Domain	373	438	2.8e-20	72.9	TIP49 AAA-lid domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926668.1
ATTTTGAAATAAACAGAAAAGACATTCGAGCTCCTCCATTAGAGGGACAGAAGCTTCCGTAACAGCAGAAAAAAACACTAGCAGGAAAAGGGAATTCACAGAGAGAGAGAGAGAGAGAGCTCAGGGAGAGAGGAGAAGAAAAGCAGGAATGAAGATAGAAGAAGTGCAATCGACCACAAAGAAACAGAGAATAGCAACTCACACTCACATTAAAGGTCTTGGCCTCGAGCCCGATGGAAAAGCATTGCCTTTGGCTGCGG...

CDS

1 records

下载 CDS FASTA

LOC131000652
ATGAAGATAGAAGAAGTGCAATCGACCACAAAGAAACAGAGAATAGCAACTCACACTCACATTAAAGGTCTTGGCCTCGAGCCCGATGGAAAAGCATTGCCTTTGGCTGCGGGATTTGTGGGTCAGAAATCCGCAAGGGAAGCTGGTGGCCTTGTGGTTGATATGATTCGACAGAAGAAGATGGCTGGCCGTGCTCTCTTACTAGCTGGTCCTCCTGGCACTGGAAAGACTGCGCTTGCTCTAGGAATTTCCCAAGAACT...

Protein

1 records

下载 Protein FASTA

XP_057782651.1
MKIEEVQSTTKKQRIATHTHIKGLGLEPDGKALPLAAGFVGQKSAREAGGLVVDMIRQKKMAGRALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVYSSEVKKTEVLMENFRRAIGLRIKENKEVYEGEVTELSPEETESVTGGYGKSISHVIIGLKTVKGTKQLKLDPTIYDALIKEKVAVGDVIYIEANSGAVKRVGRSDAFATEFDLEAEEYVPLPKGEVHKKKEIVQDVTLHDLDAANARPQGGQDILSLM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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