当前解析结果
SmilChr08G001071| 统一新 Gene ID | SmilChr08G001071 |
|---|---|
| 名称 | SmilChr08G001071 |
| 描述 | zinc finger CCCH domain-containing protein 24 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 8245545 - 8250811 / - |
| NCBI Gene ID | LOC131000656 |
|---|---|
| GeneID | 131000656 |
| locus_tag | - |
| NCBI Name | LOC131000656 |
| 原始查询 | LOC131000656 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | zinc finger CCCH domain-containing protein 24 |
| 产物 | zinc finger CCCH domain-containing protein 24 |
| Arabidopsis | AT2G28450 (AT2G28450)zinc finger (CCCH-type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:817393] identity=57.8; qcov=1; evalue=0; confidence=high |
| Rice | Os04g0105000- identity=55; qcov=0.616; evalue=5.05e-178; confidence=high |
| GO | GO:0003723 (RNA binding); GO:0006396 (RNA processing); GO:0008173 (RNA methyltransferase activity); GO:0046872 (metal ion binding) |
| KEGG | - |
| Pfam | PF00076 (RRM_1); PF00642 (zf-CCCH); PF01209 (Ubie_methyltran); PF05958 (tRNA_U5-meth_tr); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000656 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782659.1 |
| 2 | Mitochondrion | 线粒体 | 0.40000 | XP_057782659.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057782659.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057782659.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057782659.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:8245738 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B132,C21 |
Chr8:8245873 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B26 |
Chr8:8245924 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B7,B71 |
Chr8:8246077 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr8:8246083 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B61,D11 |
Chr8:8246389 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:8246474 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr8:8246616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr8:8247308 |
C |
CT |
1bp_insertion | frameshift_variant | 5 | B7,B9,B90,C17,C9 |
Chr8:8247308 |
C |
CT |
1bp_insertion | CDS_variant | 5 | B7,B9,B90,C17,C9 |
Chr8:8247611 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr8:8247616 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C82,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782659.1PF00642
zf-CCCH 50-77 aa
PF00076
RRM_1 136-195 aa
PF05958
tRNA_U5-meth_tr 496-608 aa
PF01209
Ubie_methyltran 549-604 aa
PF13847
Methyltransf_31 550-621 aa
PF13649
Methyltransf_25 551-605 aa
PF05958
tRNA_U5-meth_tr 684-738 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782659.1 |
Pfam | PF00642 |
zf-CCCH | Family | 50 | 77 | 3.4e-07 | 30.7 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) |
XP_057782659.1 |
Pfam | PF00076 |
RRM_1 | Domain | 136 | 195 | 3e-06 | 27.7 | RNA recognition motif |
XP_057782659.1 |
Pfam | PF05958 |
tRNA_U5-meth_tr | Family | 496 | 608 | 9.6e-17 | 61.7 | tRNA (Uracil-5-)-methyltransferase |
XP_057782659.1 |
Pfam | PF01209 |
Ubie_methyltran | Family | 549 | 604 | 5.2e-05 | 23.4 | ubiE/COQ5 methyltransferase family |
XP_057782659.1 |
Pfam | PF13847 |
Methyltransf_31 | Domain | 550 | 621 | 4.9e-12 | 46.6 | Methyltransferase domain |
XP_057782659.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 551 | 605 | 2.8e-08 | 35.0 | Methyltransferase domain |
XP_057782659.1 |
Pfam | PF05958 |
tRNA_U5-meth_tr | Family | 684 | 738 | 9.6e-17 | 61.7 | tRNA (Uracil-5-)-methyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。