当前解析结果
SmilChr08G001129| 统一新 Gene ID | SmilChr08G001129 |
|---|---|
| 名称 | SmilChr08G001129 |
| 描述 | mitogen-activated protein kinase homolog NTF6 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 8854025 - 8857245 / + |
| NCBI Gene ID | LOC131000712 |
|---|---|
| GeneID | 131000712 |
| locus_tag | - |
| NCBI Name | LOC131000712 |
| 原始查询 | LOC131000712 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | mitogen-activated protein kinase homolog NTF6 |
| 产物 | mitogen-activated protein kinase homolog NTF6 |
| Arabidopsis | AT1G07880 (ATMPK13)Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837303] identity=77; qcov=0.946; evalue=0; confidence=high |
| Rice | Os10g0533600 (OsMPK6)- identity=76.3; qcov=0.962; evalue=0; confidence=high |
| GO | GO:0004707 (MAP kinase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)); smil04517 (IgSF CAM signaling - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage)); smil04620 (Toll-like receptor signaling pathway - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000712 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782738.1 |
| 2 | Cytoplasm | 细胞质 | 1.00000 | XP_057782738.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057782738.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057782738.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057782738.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:8854289 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C25 |
Chr8:8854292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A8,B64,C76 |
Chr8:8854322 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:8854719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B70,C36 |
Chr8:8856132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,B52 |
Chr8:8856816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057782738.1PF07714
PK_Tyr_Ser-Thr 48-239 aa
PF00069
Pkinase 48-329 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782738.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 48 | 239 | 1.9e-30 | 106.8 | Protein tyrosine and serine/threonine kinase |
XP_057782738.1 |
Pfam | PF00069 |
Pkinase | Domain | 48 | 329 | 1.2e-67 | 228.9 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。