Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001163`

染色体: Chr08 坐标: 9297051-9299492 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001163`
名称	SmilChr08G001163
描述	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	9297051 - 9299492 / `+`

ID 对照

NCBI Gene ID	`LOC131000747`
GeneID	`131000747`
locus_tag	`-`
NCBI Name	`LOC131000747`
原始查询	`LOC131000747`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	monofunctional riboflavin biosynthesis protein RIBA 3, chloroplastic
产物	monofunctional riboflavin biosynthesis protein RIBA 3%2C chloroplastic
Arabidopsis	`AT5G59750` (RIBA3) monofunctional riboflavin biosynthesis protein RIBA 3 [Source:NCBI gene (formerly Entrezgene);Acc:836096] identity=76; qcov=0.939; evalue=0; confidence=high
Rice	`Os05g0460600` (RIBA3) - identity=73.5; qcov=0.975; evalue=0; confidence=high
GO	GO:0003935 (GTP cyclohydrolase II activity); GO:0005829 (cytosol); GO:0008686 (3,4-dihydroxy-2-butanone-4-phosphate synthase activity); GO:0009231 (riboflavin biosynthetic process)
KEGG	smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil00790 (Folate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00925 (GTP_cyclohydro2); PF00926 (DHBP_synthase)
InterPro	-
eggNOG	-
NR	GeneID:131000747

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057782788.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057782788.1`
3	Cytoplasm	细胞质	0.80000	`XP_057782789.1`
4	Cytosol	细胞质基质	0.80000	`XP_057782789.1`
5	Nucleus	细胞核	0.00000	`XP_057782788.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:9297273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:9297286`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:9297298`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B20,C18,C63
`Chr8:9297517`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B13,B139,B25,C10,C46
`Chr8:9297581`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B45,B90,B92
`Chr8:9297771`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr8:9297823`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr8:9298189`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,C11,C69
`Chr8:9298438`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B45,B90,B92
`Chr8:9298514`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr8:9298620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:9298644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C19

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782788.1

538 aa

269

538

DHBP_synthase

GTP_cyclohydro2

PF00926 DHBP_synthase 113-309 aa PF00925 GTP_cyclohydro2 319-486 aa

XP_057782789.1

395 aa

198

395

DHBP_synthase

GTP_cyclohydro2

PF00926 DHBP_synthase 1-166 aa PF00925 GTP_cyclohydro2 176-343 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782788.1`	Pfam	`PF00926`	DHBP_synthase	Family	113	309	5.7e-66	222.4	3,4-dihydroxy-2-butanone 4-phosphate synthase
`XP_057782788.1`	Pfam	`PF00925`	GTP_cyclohydro2	Family	319	486	7.8e-73	244.2	GTP cyclohydrolase II
`XP_057782789.1`	Pfam	`PF00926`	DHBP_synthase	Family	1	166	3.4e-57	193.8	3,4-dihydroxy-2-butanone 4-phosphate synthase
`XP_057782789.1`	Pfam	`PF00925`	GTP_cyclohydro2	Family	176	343	4.5e-73	245.0	GTP cyclohydrolase II

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926805.1
AACTGCAGTTTGTCACTACTCATGCATTCATGTGGCTCCAAATCTCAGGACGTTATTGCAGTGGATAACAATGCACAAAAACAAGAGGCCGCCAAATTTTTTCATAGAACAAAAAATGATCAACACACCTTGAAATCAAGACTCACTAAAAAAAAGAAAAGGCAGCAACAATATGGATTGCATTACTCTTCAGCAATCTTCGTTTCCTCACATATTGATCAGCTGGAAATCCTCACACTCAACTCATCTCACAACTATCT...

XM_057926806.1
CTCTTCCATCGAGCAAGCCCTCGCTGCATTGCGCCAACGCAAGATGATAATGATGGTGATGATGGTGATGTTGAAGGGAACCTTGTGATGGCAGCATCCCACGTGAGCTCTGAGGCGGTCGCGTTCATGGTTAGGCACGGATCTGGTATAATCTCAGTCGGCATGAAGGAAGAGGACCTTCAGAGGCTAGACCTCCCATTGATGTCGCCTCAAAATGAAGATAATTCGTCCGCTCCTTCCTTCACTGTCACTGTGGATGC...

CDS

2 records

下载 CDS FASTA

LOC131000747
ATGGATTGCATTACTCTTCAGCAATCTTCGTTTCCTCACATATTGATCAGCTGGAAATCCTCACACTCAACTCATCTCACAACTATCTCGCCTCATAGAAGTCGACCGTGTAAGTGTAAGCTTGCAGCGTGCTGCGCCGTAGGATCATCAGAGAGCTACTCATCGAACAAGCAAAATTTAAACGGCTCCTTGTTTGCTCAATCAAATGAAAATGATGAATCTTCCCCTGCACTCTTTGGAACTTTGGAAGCCGAAATAAC...

LOC131000747
ATGGCAGCATCCCACGTGAGCTCTGAGGCGGTCGCGTTCATGGTTAGGCACGGATCTGGTATAATCTCAGTCGGCATGAAGGAAGAGGACCTTCAGAGGCTAGACCTCCCATTGATGTCGCCTCAAAATGAAGATAATTCGTCCGCTCCTTCCTTCACTGTCACTGTGGATGCTAGAGTTGGAACATCTACTGGTGTGTCAGCTTCAGACAGGGAAAAAACAGTGCTTGCTCTCTCCTCTCCTGAGTCGAGGCCGGAAGA...

Protein

2 records

下载 Protein FASTA

XP_057782788.1
MDCITLQQSSFPHILISWKSSHSTHLTTISPHRSRPCKCKLAACCAVGSSESYSSNKQNLNGSLFAQSNENDESSPALFGTLEAEITQETIDFFVSDADGDPDRPSPGYSSIEQALAALRQRKFVLVVDDNDGDDGDVEGNLVMAASHVSSEAVAFMVRHGSGIISVGMKEEDLQRLDLPLMSPQNEDNSSAPSFTVTVDARVGTSTGVSASDREKTVLALSSPESRPEDFRRPGHVFPLKYRSGGVLRRVGHSEASVDL...

XP_057782789.1
MAASHVSSEAVAFMVRHGSGIISVGMKEEDLQRLDLPLMSPQNEDNSSAPSFTVTVDARVGTSTGVSASDREKTVLALSSPESRPEDFRRPGHVFPLKYRSGGVLRRVGHSEASVDLVTLAGLQPVSVLSAVVDVDDGSMASIATLRKLALDNSIPIVLITDLIRYRRKREKLVERTAVSRLPTKWGSSFMVYCYRSKLDEIEHIALVKGDIGNGQDVLVRVHSECLTGDIFGSRRCDCGNQLDLAMQLIEQAGRGVLVY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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