Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001184`

染色体: Chr08 坐标: 9486601-9489667 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001184`
名称	SmilChr08G001184
描述	putative pentatricopeptide repeat-containing protein At5g59900
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	9486601 - 9489667 / `-`

ID 对照

NCBI Gene ID	`LOC131000766`
GeneID	`131000766`
locus_tag	`-`
NCBI Name	`LOC131000766`
原始查询	`LOC131000766`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At5g59900
产物	putative pentatricopeptide repeat-containing protein At5g59900
Arabidopsis	`AT5G59900` (AT5G59900) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:836112] identity=52; qcov=0.958; evalue=0; confidence=high
Rice	`Os01g0153250` (P0030H07.23) - identity=43.4; qcov=0.801; evalue=0; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131000766

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057782815.1`
2	Nucleus	细胞核	0.00000	`XP_057782815.1`
3	Chromosome	染色体	0.00000	`XP_057782815.1`
4	Centromere	着丝粒	0.00000	`XP_057782815.1`
5	Chromatin	染色质	0.00000	`XP_057782815.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:9486798`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr8:9486899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B60,B87,C38
`Chr8:9487137`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B123,B53
`Chr8:9487214`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B16,B93,C13,C29,C43
`Chr8:9487222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B106,B140,B26,C23
`Chr8:9487466`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:9487700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B52
`Chr8:9487826`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr8:9487919`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B99,C78,C87
`Chr8:9488342`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B66,B8
`Chr8:9488499`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,B99,C78,C87
`Chr8:9488547`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B45,B62,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782815.1

901 aa

450

901

TPR_24

PPR

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_3

PPR_2

PPR

PPR_3

PPR_1

PPR_2

PPR

PPR_1

PPR

PPR_2

PPR_3

PPR_long

PPR_1

PPR_2

PPR

PPR_long

PPR_3

PPR_1

PPR

PPR_2

TPR_24

PPR_3

PPR_1

PPR

PPR_2

PPR_1

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

PPR_1

PPR_2

PPR

TPR_24

PPR_3

PPR_1

PPR_2

PPR

PPR_long

PPR_1

PPR

PPR_2

PPR_3

PPR_1

PPR_2

PPR

PF23276 TPR_24 148-239 aa PF01535 PPR 185-210 aa PF12854 PPR_1 249-276 aa PF13041 PPR_2 253-301 aa PF01535 PPR 255-280 aa PF12854 PPR_1 283-316 aa PF01535 PPR 290-320 aa PF13812 PPR_3 346-405 aa PF13041 PPR_2 357-406 aa PF01535 PPR 361-390 aa PF13812 PPR_3 381-437 aa PF12854 PPR_1 388-420 aa PF13041 PPR_2 393-441 aa PF01535 PPR 395-425 aa PF12854 PPR_1 424-455 aa PF01535 PPR 430-459 aa PF13041 PPR_2 431-473 aa PF13812 PPR_3 451-506 aa PF17177 PPR_long 451-549 aa PF12854 PPR_1 459-491 aa PF13041 PPR_2 463-511 aa PF01535 PPR 465-495 aa PF17177 PPR_long 477-590 aa PF13812 PPR_3 485-541 aa PF12854 PPR_1 493-526 aa PF01535 PPR 500-530 aa PF13041 PPR_2 501-546 aa PF23276 TPR_24 519-597 aa PF13812 PPR_3 521-576 aa PF12854 PPR_1 529-560 aa PF01535 PPR 535-565 aa PF13041 PPR_2 535-580 aa PF12854 PPR_1 563-593 aa PF01535 PPR 570-593 aa PF13041 PPR_2 599-644 aa PF01535 PPR 602-631 aa PF13812 PPR_3 624-668 aa PF13812 PPR_3 656-714 aa PF13041 PPR_2 668-717 aa PF01535 PPR 672-701 aa PF12854 PPR_1 700-731 aa PF13041 PPR_2 703-750 aa PF01535 PPR 706-736 aa PF01535 PPR 744-768 aa PF23276 TPR_24 753-869 aa PF13812 PPR_3 763-817 aa PF12854 PPR_1 768-801 aa PF13041 PPR_2 773-821 aa PF01535 PPR 775-805 aa PF17177 PPR_long 790-887 aa PF12854 PPR_1 803-835 aa PF01535 PPR 810-838 aa PF13041 PPR_2 810-855 aa PF13812 PPR_3 831-887 aa PF12854 PPR_1 838-871 aa PF13041 PPR_2 842-887 aa PF01535 PPR 845-875 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782815.1`	Pfam	`PF23276`	TPR_24	Repeat	148	239	1.7e-52	177.5	Pentatricopeptide repeat-containing protein
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	185	210	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	249	276	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	253	301	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	255	280	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	283	316	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	290	320	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF13812`	PPR_3	Repeat	346	405	8e-75	247.6	Pentatricopeptide repeat domain
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	357	406	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	361	390	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF13812`	PPR_3	Repeat	381	437	8e-75	247.6	Pentatricopeptide repeat domain
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	388	420	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	393	441	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	395	425	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	424	455	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	430	459	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	431	473	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF13812`	PPR_3	Repeat	451	506	8e-75	247.6	Pentatricopeptide repeat domain
`XP_057782815.1`	Pfam	`PF17177`	PPR_long	Repeat	451	549	1.5e-42	146.1	Pentacotripeptide-repeat region of PRORP
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	459	491	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	463	511	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	465	495	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF17177`	PPR_long	Repeat	477	590	1.5e-42	146.1	Pentacotripeptide-repeat region of PRORP
`XP_057782815.1`	Pfam	`PF13812`	PPR_3	Repeat	485	541	8e-75	247.6	Pentatricopeptide repeat domain
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	493	526	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	500	530	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	501	546	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF23276`	TPR_24	Repeat	519	597	1.7e-52	177.5	Pentatricopeptide repeat-containing protein
`XP_057782815.1`	Pfam	`PF13812`	PPR_3	Repeat	521	576	8e-75	247.6	Pentatricopeptide repeat domain
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	529	560	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	535	565	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	535	580	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	563	593	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	570	593	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	599	644	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	602	631	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF13812`	PPR_3	Repeat	624	668	8e-75	247.6	Pentatricopeptide repeat domain
`XP_057782815.1`	Pfam	`PF13812`	PPR_3	Repeat	656	714	8e-75	247.6	Pentatricopeptide repeat domain
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	668	717	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	672	701	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	700	731	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	703	750	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	706	736	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	744	768	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF23276`	TPR_24	Repeat	753	869	1.7e-52	177.5	Pentatricopeptide repeat-containing protein
`XP_057782815.1`	Pfam	`PF13812`	PPR_3	Repeat	763	817	8e-75	247.6	Pentatricopeptide repeat domain
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	768	801	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	773	821	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	775	805	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF17177`	PPR_long	Repeat	790	887	1.5e-42	146.1	Pentacotripeptide-repeat region of PRORP
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	803	835	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	810	838	2.6e-125	401.0	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	810	855	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF13812`	PPR_3	Repeat	831	887	8e-75	247.6	Pentatricopeptide repeat domain
`XP_057782815.1`	Pfam	`PF12854`	PPR_1	Repeat	838	871	1.9e-162	527.3	PPR repeat
`XP_057782815.1`	Pfam	`PF13041`	PPR_2	Repeat	842	887	8.2e-173	561.2	PPR repeat family
`XP_057782815.1`	Pfam	`PF01535`	PPR	Repeat	845	875	2.6e-125	401.0	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057926832.1
AAATGATTTTGTTCTTAATTGATCTGGGGCAAATAAATTATGGGTGATCCATTCCTGGAGCTGCACTTCAACCTAAAGAGATGCACCAAGATTGGCAGTGAATAGTAACACTACTTCTAATCGAGTTCCCCAAATCACTTCTCAATGGCCTCCTAAAAATAGCTGCGAAAATGCGGCCGCCTATCCGGAACCCTATTCCCTTCTCCAAGTTCAGACCCGCGGCGGCGGCAGCCGCCCCCCGCCTGCCCAAAGACGACGAC...

CDS

1 records

下载 CDS FASTA

LOC131000766
ATGCGGCCGCCTATCCGGAACCCTATTCCCTTCTCCAAGTTCAGACCCGCGGCGGCGGCAGCCGCCCCCCGCCTGCCCAAAGACGACGACGAAAACTTCCTGGCAGTTCTAAACGACGTCGCGCGGGGAAGTCAGAGCTGGTCCGTCGCTCTCGAGAACCCCTCCATTTCCACGCGCCTCAGCGGGAATCACATAGAGTGGTTCATCCTCCGGAATCTCCATGACTCCAGGTTAGCTCTCCGCTTCTTCAATTTCCTCGG...

Protein

1 records

下载 Protein FASTA

XP_057782815.1
MRPPIRNPIPFSKFRPAAAAAAPRLPKDDDENFLAVLNDVARGSQSWSVALENPSISTRLSGNHIEWFILRNLHDSRLALRFFNFLGLHKNFCHSTASFCLLVHSLVQSKLYWPATSLLQTLLQRDENPAFVFQIFFDSYKRSDISSPYGFDLLVQSYVQSRRVLDSVVVLNLMKECGLFPEARTMSAVLNGLIRVRRFEMVLALFDEMLVNSRMVADVYIYAAVIRSLCELRDYDRAKEMIGWIEGNGGKLNVVIYNVL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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