当前解析结果
SmilChr08G001189| 统一新 Gene ID | SmilChr08G001189 |
|---|---|
| 名称 | SmilChr08G001189 |
| 描述 | uncharacterized SmilChr08G001189 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 9520343 - 9522890 / - |
| NCBI Gene ID | LOC131000773 |
|---|---|
| GeneID | 131000773 |
| locus_tag | - |
| NCBI Name | LOC131000773 |
| 原始查询 | LOC131000773 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818333]; symbol=SLT1; hit=AT2G37570; species=arabidopsis; confidence=high |
| 产物 | HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818333]; symbol=SLT1; hit=AT2G37570; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G37570 (SLT1)HSP20-like chaperones superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:818333] identity=68.3; qcov=0.98; evalue=0; confidence=high |
| Rice | Os01g0151100 (SLT2)- identity=59.9; qcov=1.1; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF26144 (ACL_Hsps-like); PF26145 (DUF8041) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000773 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057782828.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057782828.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057782828.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057782828.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057782828.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:9521135 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B2 |
Chr8:9521690 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr8:9521749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B34,B99 |
Chr8:9521849 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr8:9521862 |
TGG |
T |
2bp_deletion | frameshift_variant | 65 | A14,A19,A2,A22,A23,A25,A8,A9,B1,B100,B106,B115,B117,B119,B124,B131,B134,B135,B136,B138,B139,B19,B23,B36,B41,B46,B5,B51,B53,B55,B56,B58,B59,B6,B62,B63,B64,B69,B7,B75,B89,B92,B95,C17,C2,C20,C24,C26,C38,C40,C44,C46,C55,C57,C59,C63,C70,C75,C76,C85,C87,C9,D10,D6,D7 |
Chr8:9521867 |
C |
CCT |
2bp_insertion | frameshift_variant | 85 | A14,A19,A2,A22,A23,A25,A8,A9,B1,B100,B105,B106,B114,B115,B117,B118,B119,B124,B131,B132,B134,B135,B136,B137,B138,B139,B18,B19,B23,B32,B36,B41,B43,B46,B5,B51,B53,B55,B56,B58,B59,B6,B62,B63,B64,B65,B69,B7,B75,B83,B89,B92,B93,B95,C11,C16,C17,C2,C20,C23,C24,C26,C3,C30,C38,C40,C42,C44,C46,C55,C57,C59,C63,C64,C70,C75,C76,C78,C85,C87,C9,D10,D3,D6,D7 |
Chr8:9521989 |
G |
GC |
1bp_insertion | frameshift_variant | 77 | A15,A19,A23,A5,A9,B102,B106,B107,B109,B110,B118,B130,B133,B135,B14,B16,B18,B22,B31,B36,B37,B41,B42,B47,B5,B52,B53,B58,B6,B69,B71,B72,B75,B79,B80,B83,B87,B90,B91,B92,B97,B99,C1,C10,C14,C20,C27,C31,C35,C36,C37,C38,C40,C41,C42,C46,C49,C50,C55,C62,C63,C66,C68,C71,C75,C76,C77,C78,C81,C85,C86,C87,C9,D2,D4,D5,D7 |
Chr8:9521994 |
AG |
A |
1bp_deletion | frameshift_variant | 74 | A15,A19,A23,A5,A9,B102,B106,B107,B109,B110,B115,B118,B133,B135,B14,B16,B18,B22,B31,B36,B37,B41,B5,B52,B53,B58,B6,B69,B71,B72,B75,B79,B80,B83,B87,B90,B91,B92,B97,B99,C1,C10,C14,C27,C31,C35,C36,C37,C38,C40,C41,C42,C46,C49,C50,C55,C62,C63,C66,C68,C71,C75,C76,C77,C78,C81,C85,C86,C87,C9,D2,D4,D5,D7 |
Chr8:9522007 |
CG |
C |
1bp_deletion | frameshift_variant | 63 | A15,A19,A23,A5,A9,B102,B106,B107,B109,B110,B133,B14,B16,B18,B22,B31,B37,B5,B52,B53,B58,B6,B69,B71,B72,B75,B79,B80,B83,B90,B91,B92,B97,B99,C1,C10,C27,C31,C35,C36,C37,C38,C40,C41,C42,C46,C49,C50,C62,C63,C66,C68,C71,C75,C76,C77,C78,C86,C87,C9,D2,D5,D7 |
Chr8:9522014 |
CGA |
C |
2bp_deletion | frameshift_variant | 59 | A15,A19,A23,A5,A9,B102,B106,B107,B109,B133,B14,B16,B18,B22,B31,B37,B5,B52,B53,B58,B69,B71,B72,B75,B79,B80,B83,B90,B91,B92,B97,B99,C1,C10,C27,C31,C36,C37,C38,C40,C41,C42,C46,C49,C50,C62,C63,C66,C68,C75,C76,C77,C78,C86,C87,C9,D2,D5,D7 |
Chr8:9522017 |
A |
ATC |
2bp_insertion | frameshift_variant | 60 | A15,A19,A23,A5,A9,B102,B106,B107,B109,B133,B14,B16,B18,B22,B31,B37,B5,B52,B53,B58,B69,B71,B72,B75,B79,B80,B83,B90,B91,B92,B97,B99,C1,C10,C27,C31,C36,C37,C38,C40,C41,C42,C46,C49,C50,C62,C63,C66,C68,C75,C76,C77,C78,C86,C87,C9,D10,D2,D5,D7 |
Chr8:9522019 |
C |
CA |
1bp_insertion | frameshift_variant | 60 | A15,A19,A23,A5,A9,B102,B106,B107,B109,B133,B14,B16,B18,B22,B31,B37,B5,B52,B53,B58,B69,B71,B72,B75,B79,B80,B83,B90,B91,B92,B97,B99,C1,C10,C27,C31,C36,C37,C38,C40,C41,C42,C46,C49,C50,C62,C63,C66,C68,C75,C76,C77,C78,C86,C87,C9,D10,D2,D5,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057782828.1PF26145
DUF8041 94-261 aa
PF26144
ACL_Hsps-like 371-479 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057782828.1 |
Pfam | PF26145 |
DUF8041 | Domain | 94 | 261 | 2.1e-98 | 327.8 | Domain of unknown function (DUF8041) |
XP_057782828.1 |
Pfam | PF26144 |
ACL_Hsps-like | Domain | 371 | 479 | 7.5e-58 | 194.1 | Hsps-like alpha-crystallin-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。