Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001200`

染色体: Chr08 坐标: 9689406-9693683 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001200`
名称	SmilChr08G001200
描述	uncharacterized SmilChr08G001200
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	9689406 - 9693683 / `+`

ID 对照

NCBI Gene ID	`LOC131000787`
GeneID	`131000787`
locus_tag	`-`
NCBI Name	`LOC131000787`
原始查询	`LOC131000787`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os07g0190600; species=rice; confidence=weak
产物	hit=Os07g0190600; species=rice; confidence=weak
Arabidopsis	`AT2G05642` (AT2G05642) Nucleic acid-binding, OB-fold-like protein [Source:NCBI gene (formerly Entrezgene);Acc:819430] identity=22.6; qcov=0.688; evalue=4.22e-24; confidence=weak
Rice	`Os07g0190600` - identity=24; qcov=0.628; evalue=1.4e-25; confidence=weak
GO	GO:0003677 (DNA binding); GO:0005634 (nucleus); GO:0006260 (DNA replication); GO:0006281 (DNA repair); GO:0006310 (DNA recombination)
KEGG	-
Pfam	PF02721 (DUF223); PF08646 (Rep_fac-A_C)
InterPro	-
eggNOG	-
NR	GeneID:131000787

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057782839.1`
2	Chromosome	染色体	0.20000	`XP_057782839.1`
3	Centromere	着丝粒	0.00000	`XP_057782839.1`
4	Chromatin	染色质	0.00000	`XP_057782839.1`
5	Telomere	端粒	0.00000	`XP_057782839.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:9689958`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr8:9689996`	`TA`	`T`	1bp_deletion	frameshift_variant	28	A13,A15,A20,A3,B125,B135,B14,B140,B18,B23,B36,B60,B63,B7,B70,B71,B77,B8,B94,C21,C39,C51,C61,C70,C87,D3,D5,D7
`Chr8:9690075`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B72
`Chr8:9690075`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr8:9690076`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B115,C25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782839.1

678 aa

339

678

DUF223

Rep_fac-A_C

PF02721 DUF223 14-128 aa PF08646 Rep_fac-A_C 307-416 aa

XP_057782840.1

670 aa

335

670

DUF223

Rep_fac-A_C

PF02721 DUF223 14-128 aa PF08646 Rep_fac-A_C 299-408 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782839.1`	Pfam	`PF02721`	DUF223	Domain	14	128	1.9e-14	54.6	Domain of unknown function DUF223
`XP_057782839.1`	Pfam	`PF08646`	Rep_fac-A_C	Domain	307	416	9.4e-11	42.4	Replication factor-A C terminal domain
`XP_057782840.1`	Pfam	`PF02721`	DUF223	Domain	14	128	1.8e-14	54.6	Domain of unknown function DUF223
`XP_057782840.1`	Pfam	`PF08646`	Rep_fac-A_C	Domain	299	408	9.2e-11	42.4	Replication factor-A C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926856.1
TTCAAAAATCTTCAAAAATTTCTATTTGTTTCATTTTTAATCATTTCTCAATATTGCTGCAGAGAGCCTTTCCATGGAAAGAGCTATTCCACTGATAAGTGGCAGTGAGAATGATGAATATTCTTTATGCTGATTTTTCAAACTTCACTGCATTTCGAAAAATTCTTTTTGTTGTCTATTTGAAAACTTTTTGTTTGATTTTCTATAATGAATATTCTGTATGCTCATTTTTCTATCTTTACTACTTTTCAAAAATTTCT...

XM_057926857.1
TTCAAAAATCTTCAAAAATTTCTATTTGTTTCATTTTTAATCATTTCTCAATATTGCTGCAGAGAGCCTTTCCATGGAAAGAGCTATTCCACTGATAAGTGGCAGTGAGAATGATGAATATTCTTTATGCTGATTTTTCAAACTTCACTGCATTTCGAAAAATTCTTTTTGTTGTCTATTTGAAAACTTTTTGTTTGATTTTCTATAATGAATATTCTGTATGCTCATTTTTCTATCTTTACTACTTTTCAAAAATTTCT...

CDS

2 records

下载 CDS FASTA

LOC131000787
ATGGCTCCTCTGTACACCAATATTGATGCACTGGTGACAAATAAAACAACTCAAGCCATAAAAGTGCGCTGTGTGCGAGTGTACAATAGATACGTTGCTGGCTCAAAGTCCGAAATAATTCGAATTGAGTGTGTTGTGCATGATGAACAGGGAACACGGATACAATTGAGTGTGCCAAACAAACTAACCAAAATGTTTGGAAACAAACTTAAAGAAGGTTTGGTTTATCAAATAATGAATTTCATGGTCAAGAGAAATGG...

Protein

2 records

下载 Protein FASTA

XP_057782839.1
MAPLYTNIDALVTNKTTQAIKVRCVRVYNRYVAGSKSEIIRIECVVHDEQGTRIQLSVPNKLTKMFGNKLKEGLVYQIMNFMVKRNGTKWKVTDHVHRLELTPKTMISEVFPKCFPNYKFSFKSFEDISSIQTTDSVGMFDVIGVIAGKGFVKNDSESKMVELKLEDQNHNQIYCTLWEDYVDMFLNQADAADTRVQIIIIQLCRPNFYRGEMRACTSYNASQIFLNSDIPEIEDFRKQIIGNQSFSARLELSFEKSVVQ...

XP_057782840.1
MAPLYTNIDALVTNKTTQAIKVRCVRVYNRYVAGSKSEIIRIECVVHDEQGTRIQLSVPNKLTKMFGNKLKEGLVYQIMNFMVKRNGTKWKVTDHVHRLELTPKTMISEVFPKCFPNYKFSFKSFEDISSIQTTDSVGMFDVIGVIAGKGFVKNDSESKMVELKLEDQNHNQIYCTLWEDYVDMFLNQADAADTRVQIIIIQLCRPNFYRGEMRACTSYNASQIFLNSDIPEIEDFRKQIIGNQSFSARLELSFEKSVVQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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