Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及有 accession 序列支持的文献基因名查询；未闭环名称仅提供候选导航。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001208`

染色体: Chr08 坐标: 9753666-9760943 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001208`
名称	SmilChr08G001208
描述	pumilio homolog 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	9753666 - 9760943 / `+`

ID 对照

NCBI Gene ID	`LOC131000795`
GeneID	`131000795`
locus_tag	`-`
NCBI Name	`LOC131000795`
原始查询	`LOC131000795`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pumilio homolog 2-like
产物	pumilio homolog 2-like
Arabidopsis	`AT2G29190` (PUM2) pumilio 2 [Source:NCBI gene (formerly Entrezgene);Acc:817468] identity=57.53; qcov=0.995; evalue=0.0; confidence=high
Rice	`Os01g0844800` - identity=54.3; qcov=0.973; evalue=0.0; confidence=high
GO	GO:0003729 (mRNA binding); GO:0005737 (cytoplasm); GO:0010608 (post-transcriptional regulation of gene expression)
KEGG	-
Pfam	PF00806 (PUF); PF07990 (NABP); PF22493 (PUF_NOP9)
InterPro	-
eggNOG	-
NR	GeneID:131000795

打开注释模块

非零投票定位候选（最多五项）

Rank	定位位置	中文	五折投票比例	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057782855.1`
2	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057782855.1`
3	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.40000	`XP_057782855.1`
4	P-body	P-body	0.40000	`XP_057782855.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:9754573`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:9754585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:9754648`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B58,C17,C31
`Chr8:9754696`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,B64
`Chr8:9754699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr8:9756115`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B108,B13,B68
`Chr8:9756124`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr8:9756422`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C52
`Chr8:9756948`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:9757028`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,B25
`Chr8:9757420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B99,C87
`Chr8:9760223`	`CA`	`C`	1bp_deletion	frameshift_variant	1	B59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782855.1

1042 aa

521

1042

NABP

PUF

PUF_NOP9

PUF

PF07990 NABP 301-702 aa PF00806 PUF 707-740 aa PF00806 PUF 745-775 aa PF00806 PUF 779-812 aa PF22493 PUF_NOP9 817-896 aa PF00806 PUF 821-845 aa PF00806 PUF 851-886 aa PF00806 PUF 890-921 aa PF00806 PUF 925-957 aa PF00806 PUF 970-999 aa

XP_057782856.1

1042 aa

521

1042

NABP

PUF

PUF_NOP9

PUF

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782855.1`	Pfam	`PF07990`	NABP	Domain	301	702	1.4e-133	447.0	Nucleic acid binding protein NABP
`XP_057782855.1`	Pfam	`PF00806`	PUF	Repeat	707	740	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782855.1`	Pfam	`PF00806`	PUF	Repeat	745	775	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782855.1`	Pfam	`PF00806`	PUF	Repeat	779	812	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782855.1`	Pfam	`PF22493`	PUF_NOP9	Repeat	817	896	6.7e-22	78.8	NOP9-like PUF repeat domain
`XP_057782855.1`	Pfam	`PF00806`	PUF	Repeat	821	845	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782855.1`	Pfam	`PF00806`	PUF	Repeat	851	886	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782855.1`	Pfam	`PF00806`	PUF	Repeat	890	921	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782855.1`	Pfam	`PF00806`	PUF	Repeat	925	957	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782855.1`	Pfam	`PF00806`	PUF	Repeat	970	999	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782856.1`	Pfam	`PF07990`	NABP	Domain	301	702	1.4e-133	447.0	Nucleic acid binding protein NABP
`XP_057782856.1`	Pfam	`PF00806`	PUF	Repeat	707	740	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782856.1`	Pfam	`PF00806`	PUF	Repeat	745	775	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782856.1`	Pfam	`PF00806`	PUF	Repeat	779	812	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782856.1`	Pfam	`PF22493`	PUF_NOP9	Repeat	817	896	6.7e-22	78.8	NOP9-like PUF repeat domain
`XP_057782856.1`	Pfam	`PF00806`	PUF	Repeat	821	845	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782856.1`	Pfam	`PF00806`	PUF	Repeat	851	886	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782856.1`	Pfam	`PF00806`	PUF	Repeat	890	921	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782856.1`	Pfam	`PF00806`	PUF	Repeat	925	957	1.4e-82	271.2	Pumilio-family RNA binding repeat
`XP_057782856.1`	Pfam	`PF00806`	PUF	Repeat	970	999	1.4e-82	271.2	Pumilio-family RNA binding repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057926872.1
GATACACATAGAAATATTAGAACGTTACAAAAAAGAATTTATTAGGCAAGTGTAGCCCGTGCCTCCCTTCCTCTTTCTTTAGTTGTGAAACAAAACCCTAAATGGGGTTCAATTCGCCGCCAGATTGATCCTCTTCCTTATTAAATAAACCTGTGATCCTCTGTCTCACTCTCAGTGTTCTTGCACAAACTCTACACCAATACCATTTCACTCTCTCTCAGAGGCAGGCACCTTGGTTTTTTCCTTTCTTTTAATCACAA...

XM_057926873.1
ATTAGGCAAGTGTAGCCCGTGCCTCCCTTCCTCTTTCTTTAGTTGTGAAACAAAACCCTAAATGGGGTTCAATTCGCCGCCAGATTGATCCTCTTCCTTATTAAATAAACCTGTGATCCTCTGTCTCACTCTCAGTGTTCTTGCACAAACTCTACACCAATACCATTTCACTCTCTCTCAGAGTTGTTATCTGTGGCTATTGAGTTTGTGAAGAATCATGTTGTCTGAATTGGGTAGAAGGCCGACGATTGGAAATAATG...

CDS

2 records

下载 CDS FASTA

lcl|NC_080394.1_cds_XP_057782855.1_41820
ATGTTGTCTGAATTGGGTAGAAGGCCGACGATTGGAAATAATGAAAATTCATTTGGAGATGAGTTTGAGAAGGAGATAGGTTTCTTGCTCCGTGAACAGCGGAGGCAAGAGGCCGATGATCTTGAGAAGGAGCTGAATTTGTATAGGAGTGGATCGGCTCCACCTACTGTGGATGGTTCATTGAGTGCAGTTGGTGGCTTGTTCAACCATGGTGGTGCTGCGGGTGGCCCGGCTTTTGCTGATTTCGCGGAAAGCAGTGG...

lcl|NC_080394.1_cds_XP_057782856.1_41821
ATGTTGTCTGAATTGGGTAGAAGGCCGACGATTGGAAATAATGAAAATTCATTTGGAGATGAGTTTGAGAAGGAGATAGGTTTCTTGCTCCGTGAACAGCGGAGGCAAGAGGCCGATGATCTTGAGAAGGAGCTGAATTTGTATAGGAGTGGATCGGCTCCACCTACTGTGGATGGTTCATTGAGTGCAGTTGGTGGCTTGTTCAACCATGGTGGTGCTGCGGGTGGCCCGGCTTTTGCTGATTTCGCGGAAAGCAGTGG...

Protein

2 records

下载 Protein FASTA

XP_057782855.1
MLSELGRRPTIGNNENSFGDEFEKEIGFLLREQRRQEADDLEKELNLYRSGSAPPTVDGSLSAVGGLFNHGGAAGGPAFADFAESSGNGFMSEEELRSDPAYLSYYYSNVNLNPRLPPPLISREDWRFAQRFQGGSSAIGDRRKVNRDDSGNGGRSMFPSQPSFNSNKQESEDMDRLQGHVEWGGDGLIGLPGLGLGGKQKSLVEIFKDDFNRATPDSTHPSRPASRNAFDENANALSSAEAELAHLYGDFTSSDPLLSA...

XP_057782856.1
MLSELGRRPTIGNNENSFGDEFEKEIGFLLREQRRQEADDLEKELNLYRSGSAPPTVDGSLSAVGGLFNHGGAAGGPAFADFAESSGNGFMSEEELRSDPAYLSYYYSNVNLNPRLPPPLISREDWRFAQRFQGGSSAIGDRRKVNRDDSGNGGRSMFPSQPSFNSNKQESEDMDRLQGHVEWGGDGLIGLPGLGLGGKQKSLVEIFKDDFNRATPDSTHPSRPASRNAFDENANALSSAEAELAHLYGDFTSSDPLLSA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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