Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001221`

染色体: Chr08 坐标: 9844373-9847637 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001221`
名称	SmilChr08G001221
描述	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	9844373 - 9847637 / `+`

ID 对照

NCBI Gene ID	`LOC131000809`
GeneID	`131000809`
locus_tag	`-`
NCBI Name	`LOC131000809`
原始查询	`LOC131000809`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380
产物	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380
Arabidopsis	`AT5G48380` (BIR1) BAK1-interacting receptor-like kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:834892] identity=59.4; qcov=0.96; evalue=0; confidence=high
Rice	`Os05g0414700` - identity=62; qcov=0.944; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2)
InterPro	-
eggNOG	-
NR	GeneID:131000809

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057782878.1`
2	Nucleus	细胞核	0.00000	`XP_057782878.1`
3	Chromosome	染色体	0.00000	`XP_057782878.1`
4	Centromere	着丝粒	0.00000	`XP_057782878.1`
5	Chromatin	染色质	0.00000	`XP_057782878.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:9845640`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr8:9845643`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C19,C34
`Chr8:9845892`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,B71
`Chr8:9845976`	`GC`	`G`	1bp_deletion	frameshift_variant	1	C47
`Chr8:9845976`	`GC`	`G`	1bp_deletion	CDS_variant	1	C47
`Chr8:9846124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C19,C34
`Chr8:9846518`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B8
`Chr8:9846532`	`CGA`	`C`	2bp_deletion	frameshift_variant	1	C13
`Chr8:9846532`	`CGA`	`C`	2bp_deletion	CDS_variant	1	C13
`Chr8:9846694`	`G`	`GCC`	2bp_insertion	frameshift_variant	21	B111,B115,B13,B130,B140,B25,B29,B39,B62,B73,B76,B8,B88,B89,B90,C40,C42,C56,C71,C79,C86
`Chr8:9846696`	`GT`	`G`	1bp_deletion	frameshift_variant	21	B111,B115,B13,B130,B140,B25,B29,B39,B52,B62,B73,B76,B8,B88,B89,B90,C40,C42,C56,C79,C86
`Chr8:9846698`	`AG`	`A`	1bp_deletion	frameshift_variant	21	B111,B115,B13,B130,B140,B25,B39,B52,B62,B73,B76,B8,B88,B89,B90,C16,C40,C42,C56,C79,C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782878.1

621 aa

310

621

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 36-78 aa PF00560 LRR_1 109-130 aa PF00560 LRR_1 135-155 aa PF00069 Pkinase 309-579 aa PF07714 PK_Tyr_Ser-Thr 312-516 aa

XP_057782879.1

621 aa

310

621

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 36-78 aa PF00560 LRR_1 109-130 aa PF00560 LRR_1 135-155 aa PF00069 Pkinase 309-579 aa PF07714 PK_Tyr_Ser-Thr 312-516 aa

XP_057782880.1

621 aa

310

621

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 36-78 aa PF00560 LRR_1 109-130 aa PF00560 LRR_1 135-155 aa PF00069 Pkinase 309-579 aa PF07714 PK_Tyr_Ser-Thr 312-516 aa

XP_057782881.1

621 aa

310

621

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 36-78 aa PF00560 LRR_1 109-130 aa PF00560 LRR_1 135-155 aa PF00069 Pkinase 309-579 aa PF07714 PK_Tyr_Ser-Thr 312-516 aa

XP_057782882.1

621 aa

310

621

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 36-78 aa PF00560 LRR_1 109-130 aa PF00560 LRR_1 135-155 aa PF00069 Pkinase 309-579 aa PF07714 PK_Tyr_Ser-Thr 312-516 aa

XP_057782883.1

621 aa

310

621

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 36-78 aa PF00560 LRR_1 109-130 aa PF00560 LRR_1 135-155 aa PF00069 Pkinase 309-579 aa PF07714 PK_Tyr_Ser-Thr 312-516 aa

XP_057782884.1

621 aa

310

621

LRRNT_2

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 36-78 aa PF00560 LRR_1 109-130 aa PF00560 LRR_1 135-155 aa PF00069 Pkinase 309-579 aa PF07714 PK_Tyr_Ser-Thr 312-516 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782878.1`	Pfam	`PF08263`	LRRNT_2	Family	36	78	3.3e-09	37.6	Leucine rich repeat N-terminal domain
`XP_057782878.1`	Pfam	`PF00560`	LRR_1	Repeat	109	130	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782878.1`	Pfam	`PF00560`	LRR_1	Repeat	135	155	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782878.1`	Pfam	`PF00069`	Pkinase	Domain	309	579	5.2e-32	112.0	Protein kinase domain
`XP_057782878.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	312	516	3.6e-35	122.2	Protein tyrosine and serine/threonine kinase
`XP_057782879.1`	Pfam	`PF08263`	LRRNT_2	Family	36	78	3.3e-09	37.6	Leucine rich repeat N-terminal domain
`XP_057782879.1`	Pfam	`PF00560`	LRR_1	Repeat	109	130	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782879.1`	Pfam	`PF00560`	LRR_1	Repeat	135	155	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782879.1`	Pfam	`PF00069`	Pkinase	Domain	309	579	5.2e-32	112.0	Protein kinase domain
`XP_057782879.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	312	516	3.6e-35	122.2	Protein tyrosine and serine/threonine kinase
`XP_057782880.1`	Pfam	`PF08263`	LRRNT_2	Family	36	78	3.3e-09	37.6	Leucine rich repeat N-terminal domain
`XP_057782880.1`	Pfam	`PF00560`	LRR_1	Repeat	109	130	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782880.1`	Pfam	`PF00560`	LRR_1	Repeat	135	155	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782880.1`	Pfam	`PF00069`	Pkinase	Domain	309	579	5.2e-32	112.0	Protein kinase domain
`XP_057782880.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	312	516	3.6e-35	122.2	Protein tyrosine and serine/threonine kinase
`XP_057782881.1`	Pfam	`PF08263`	LRRNT_2	Family	36	78	3.3e-09	37.6	Leucine rich repeat N-terminal domain
`XP_057782881.1`	Pfam	`PF00560`	LRR_1	Repeat	109	130	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782881.1`	Pfam	`PF00560`	LRR_1	Repeat	135	155	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782881.1`	Pfam	`PF00069`	Pkinase	Domain	309	579	5.2e-32	112.0	Protein kinase domain
`XP_057782881.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	312	516	3.6e-35	122.2	Protein tyrosine and serine/threonine kinase
`XP_057782882.1`	Pfam	`PF08263`	LRRNT_2	Family	36	78	3.3e-09	37.6	Leucine rich repeat N-terminal domain
`XP_057782882.1`	Pfam	`PF00560`	LRR_1	Repeat	109	130	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782882.1`	Pfam	`PF00560`	LRR_1	Repeat	135	155	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782882.1`	Pfam	`PF00069`	Pkinase	Domain	309	579	5.2e-32	112.0	Protein kinase domain
`XP_057782882.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	312	516	3.6e-35	122.2	Protein tyrosine and serine/threonine kinase
`XP_057782883.1`	Pfam	`PF08263`	LRRNT_2	Family	36	78	3.3e-09	37.6	Leucine rich repeat N-terminal domain
`XP_057782883.1`	Pfam	`PF00560`	LRR_1	Repeat	109	130	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782883.1`	Pfam	`PF00560`	LRR_1	Repeat	135	155	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782883.1`	Pfam	`PF00069`	Pkinase	Domain	309	579	5.2e-32	112.0	Protein kinase domain
`XP_057782883.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	312	516	3.6e-35	122.2	Protein tyrosine and serine/threonine kinase
`XP_057782884.1`	Pfam	`PF08263`	LRRNT_2	Family	36	78	3.3e-09	37.6	Leucine rich repeat N-terminal domain
`XP_057782884.1`	Pfam	`PF00560`	LRR_1	Repeat	109	130	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782884.1`	Pfam	`PF00560`	LRR_1	Repeat	135	155	1.8e-10	39.5	Leucine Rich Repeat
`XP_057782884.1`	Pfam	`PF00069`	Pkinase	Domain	309	579	5.2e-32	112.0	Protein kinase domain
`XP_057782884.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	312	516	3.6e-35	122.2	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

7 records

下载 cDNA FASTA

XM_057926898.1
AGCAACTAAATTATATGGTGGTGAATTAATTAACGAAATCAAATTCCTCACAAAGAAGAGAGAGAAAATGGCGAAGCAGAAGTCTTGCCCTTTTTGGTCGTCGCATGTATTGTAGTCTTCTGCTAGTTCTTGTCTTGAACTCCCCCAGTGGGAAACCCGGACGAAAATTCAAGGAAAGCAAAATTTGATGATGAAAATTGTCAGCTTACCGTATTTGACCCGCCAATCAACAGTGATAGATTTCAACCATTTTTTATTTC...

XM_057926897.1
CCTCACAAAGAAGAGAGAGAAAATGGCGAAGCAGAAGTCTTGCCCTTTTTGGTCGTCGCATGTATTGTAGTCTTCTGCTAGTTCTTGTCTTGAACTCCCCCAGTGGGAAACCCGGACGAAAATTCAAGGAAAGCAAAATTTGATGATGAAAATTGTCAGCTTACCGTATTTGACCCGCCAATCAACAGTGATAGATTTCAACCATTTTTTATTTCCTCTCCACTTTCACACTATCATAATCCCAGTCGTCTCCATTTAAC...

CDS

7 records

下载 CDS FASTA

LOC131000809
ATGGCTGTTGTATCAATGAGAATCTTATTAGGCTCTGGAGCCCCCTCAGCTTTCATCAGAATTTTTGTTTGGTTGCTCCTAACTGAATCATTTGGCTTGTTTGCTCAAAATGATGTTGACTGCCTCAGAGCAATCAAAAGTTCCTTGGAAGACCCGTTGGGCAACTTAGGCTCATGGGATTTTAGCAACAACAGTCGAACATCTATCTGTAAGTTTACTGGGATCGAATGCTGGCACGAGGATGACAACAAGATATTGAA...

Protein

7 records

下载 Protein FASTA

XP_057782878.1
MAVVSMRILLGSGAPSAFIRIFVWLLLTESFGLFAQNDVDCLRAIKSSLEDPLGNLGSWDFSNNSRTSICKFTGIECWHEDDNKILNIRLPDMGLKGDFPQGIAGCKALTGLDLSRNSIRGSIPNDISKLIGFVTSLDLSSNQLSGEIPVNLGNCSFLNILRLDSNQLTGQIPLELGALSRLKTFSVANNRLSGQVPTFANASIPAENYANNPGLCGGPLPRCSGKSKANHTPIIIAAAVGGLTIAALGFVIGMFFLRRV...

XP_057782879.1
MAVVSMRILLGSGAPSAFIRIFVWLLLTESFGLFAQNDVDCLRAIKSSLEDPLGNLGSWDFSNNSRTSICKFTGIECWHEDDNKILNIRLPDMGLKGDFPQGIAGCKALTGLDLSRNSIRGSIPNDISKLIGFVTSLDLSSNQLSGEIPVNLGNCSFLNILRLDSNQLTGQIPLELGALSRLKTFSVANNRLSGQVPTFANASIPAENYANNPGLCGGPLPRCSGKSKANHTPIIIAAAVGGLTIAALGFVIGMFFLRRV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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