Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001351

染色体: Chr08 坐标: 10821711-10826764 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001351
名称SmilChr08G001351
描述extra-large guanine nucleotide-binding protein 1-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向10821711 - 10826764 / -

ID 对照

NCBI Gene IDLOC131000823
GeneID131000823
locus_tag-
NCBI NameLOC131000823
原始查询LOC131000823

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述extra-large guanine nucleotide-binding protein 1-like
产物extra-large guanine nucleotide-binding protein 1-like
ArabidopsisAT2G23460 (XLG1)
extra-large G-protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:816878]
identity=49.8; qcov=0.969; evalue=0; confidence=high
RiceOs12g0593000
-
identity=50.5; qcov=0.732; evalue=0; confidence=high
GOGO:0001664 (G protein-coupled receptor binding); GO:0003924 (GTPase activity); GO:0005834 (heterotrimeric G-protein complex); GO:0007188 (adenylate cyclase-modulating G protein-coupled receptor signaling pathway); GO:0019001 (guanyl nucleotide binding); GO:0031683 (G-protein beta/gamma-subunit complex binding)
KEGG-
PfamPF00503 (G-alpha)
InterPro-
eggNOG-
NRGeneID:131000823

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057782901.1
2 Cytosol 细胞质基质 0.20000 XP_057782899.1
3 Nucleus 细胞核 0.00000 XP_057782899.1
4 Chromosome 染色体 0.00000 XP_057782899.1
5 Centromere 着丝粒 0.00000 XP_057782899.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:10822193 G A EMS_canonical_SNV CDS_variant 1 B80
Chr8:10822422 G A EMS_canonical_SNV CDS_variant 1 D11
Chr8:10822613 G A EMS_canonical_SNV CDS_variant 1 B25
Chr8:10822818 TG T 1bp_deletion frameshift_variant 136 A10,A11,A15,A18,A19,A2,A20,A24,A25,A3,A5,A6,A7,A9,B10,B100,B101,B103,B105,B107,B108,B109,B111,B114,B117,B118,B12,B121,B124,B127,B129,B13,B130,B131,B133,B134,B135,B14,B140,B15,B16,B18,B19,B22,B24,B25,B26,B27,B28,B3,B30,B33,B34,B36,B37,B38,B39,B4,B40,B41,B44,B47,B48,B5,B50,B52,B58,B59,B6,B61,B62,B65,B66,B69,B7,B70,B72,B74,B75,B76,B78,B79,B8,B80,B89,B91,B95,B98,C10,C11,C15,C16,C22,C23,C24,C26,C27,C28,C32,C33,C35,C36,C39,C4,C40,C45,C48,C50,C51,C52,C55,C56,C60,C62,C64,C65,C66,C68,C69,C7,C70,C72,C73,C74,C77,C78,C79,C80,C81,C82,C84,C85,D3,D4,D5,D9
Chr8:10825276 G A EMS_canonical_SNV CDS_variant 3 B60,C6,C76
Chr8:10825847 C T EMS_canonical_SNV CDS_variant 2 B8,C28
Chr8:10826127 C T EMS_canonical_SNV CDS_variant 1 C51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057782899.1
937 aa
N
1
468
937
G-alpha
C
PF00503 G-alpha 499-901 aa
XP_057782900.1
936 aa
N
1
468
936
G-alpha
C
PF00503 G-alpha 499-900 aa
XP_057782901.1
912 aa
N
1
456
912
G-alpha
C
PF00503 G-alpha 499-876 aa
XP_057782902.1
911 aa
N
1
456
911
G-alpha
C
PF00503 G-alpha 499-875 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057782899.1 Pfam PF00503 G-alpha Domain 499 901 1.2e-64 219.4 G-protein alpha subunit
XP_057782900.1 Pfam PF00503 G-alpha Domain 499 900 1e-64 219.6 G-protein alpha subunit
XP_057782901.1 Pfam PF00503 G-alpha Domain 499 876 2.4e-66 224.9 G-protein alpha subunit
XP_057782902.1 Pfam PF00503 G-alpha Domain 499 875 2.1e-66 225.1 G-protein alpha subunit

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057926919.1
CTAGTCTACGCTAACACTTGTTGGTGGAAAAGTGATGAAGGAGCAGGTTGCAGGTCCGTTATGTTTGTTGTATCGTTCCAACACGTAAAATATTTGTGTTTCCCACCATCTTATTCTTAGTTGTCAAACACTCCAAATTTCTTGCAAACGCGTGCCACATGATTCAAAATTTCAACTCTTCTTTTCTCTCTCGACCCAACAAGTCAAAACTTCTCCGAATTTTCTAGGATCAACGGTAAGACCAGGCCCGGTGCAATCGT...
XM_057926917.1
CTAGTCTACGCTAACACTTGTTGGTGGAAAAGTGATGAAGGAGCAGGTTGCAGGTCCGTTATGTTTGTTGTATCGTTCCAACACGTAAAATATTTGTGTTTCCCACCATCTTATTCTTAGTTGTCAAACACTCCAAATTTCTTGCAAACGCGTGCCACATGATTCAAAATTTCAACTCTTCTTTTCTCTCTCGACCCAACAAGTCAAAACTTCTCCGAATTTTCTAGGATCAACGGTAAGACCAGGCCCGGTGCAATCGT...

CDS

4 records

下载 CDS FASTA
LOC131000823
ATGACCAGCGTCTTCAGAAGTATTTTGCCCGATTCTTCCGCGAAAACTGAGGATGTCGATGATGGTGATTATAGTGTTGAGTACTCTTTCGCGATGGAGTATAGTGGGCCACCGGTTAGTCATGATATTCCCCAGGTTGTTCCCATTGATATTCGCCGGATTCCGACCGCATCCGTGGCGGCTAGGGCTGTTATGCTCAAGGATTTTACCTTGCCAGTTATTCAGCCAGTAGTCAAAAGTGATCAGTCTAAGAAGAACGT...
LOC131000823
ATGACCAGCGTCTTCAGAAGTATTTTGCCCGATTCTTCCGCGAAAACTGAGGATGTCGATGATGGTGATTATAGTGTTGAGTACTCTTTCGCGATGGAGTATAGTGGGCCACCGGTTAGTCATGATATTCCCCAGGTTGTTCCCATTGATATTCGCCGGATTCCGACCGCATCCGTGGCGGCTAGGGCTGTTATGCTCAAGGATTTTACCTTGCCAGTTATTCAGCCAGTAGTCAAAAGTGATCAGTCTAAGAAGAACGT...

Protein

4 records

下载 Protein FASTA
XP_057782899.1
MTSVFRSILPDSSAKTEDVDDGDYSVEYSFAMEYSGPPVSHDIPQVVPIDIRRIPTASVAARAVMLKDFTLPVIQPVVKSDQSKKNVLGESSSGSKTAERSSKVVSSGRVYSRKLDKGSNTEVALATTDGYVRKSNELGGTQNSTDGATLPNDTSHVEGFNGEGIAVISYDKCSNAKSLEASSENSSCDGAEDCVVEPSGLGNRMSAVTFRDSPSIDSISEESDEYENANFRERPVALNDGKKGSCYKCHKRNRFAEKEI...
XP_057782900.1
MTSVFRSILPDSSAKTEDVDDGDYSVEYSFAMEYSGPPVSHDIPQVVPIDIRRIPTASVAARAVMLKDFTLPVIQPVVKSDQSKKNVLGESSSGSKTAERSSKVVSSGRVYSRKLDKGSNTEVALATTDGYVRKSNELGGTQNSTDGATLPNDTSHVEGFNGEGIAVISYDKCSNAKSLEASSENSSCDGAEDCVVEPSGLGNRMSAVTFRDSPSIDSISEESDEYENANFRERPVALNDGKKGSCYKCHKRNRFAEKEI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器