Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001269`

染色体: Chr08 坐标: 10099950-10109983 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001269`
名称	SmilChr08G001269
描述	exocyst complex component SEC10b
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	10099950 - 10109983 / `+`

ID 对照

NCBI Gene ID	`LOC131000826`
GeneID	`131000826`
locus_tag	`-`
NCBI Name	`LOC131000826`
原始查询	`LOC131000826`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	exocyst complex component SEC10b
产物	exocyst complex component SEC10b
Arabidopsis	`AT5G12370` (SEC10) exocyst complex component sec10 [Source:NCBI gene (formerly Entrezgene);Acc:831112] identity=79.7; qcov=0.992; evalue=0; confidence=high
Rice	`Os12g0238100` (SEC10) - identity=73.8; qcov=0.982; evalue=0; confidence=high
GO	GO:0000145 (exocyst); GO:0005737 (cytoplasm); GO:0006887 (exocytosis); GO:0006893 (Golgi to plasma membrane transport)
KEGG	-
Pfam	PF07393 (Sec10_HB); PF20667 (Sec10_N)
InterPro	-
eggNOG	-
NR	GeneID:131000826

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057782907.1`
2	Trans-golgi network	Trans-golgi network	1.00000	`XP_057782907.1`
3	Phragmoplast	Phragmoplast	0.60000	`XP_057782907.1`
4	Cytosol	细胞质基质	0.60000	`XP_057782907.1`
5	Clathrin-coated vesicle	Clathrin-coated vesicle	0.40000	`XP_057782907.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:10100604`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr8:10100911`	`GT`	`G`	1bp_deletion	frameshift_variant	7	A19,B110,B135,B17,B61,C17,C72
`Chr8:10100931`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A19,B61,C72
`Chr8:10102621`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B27
`Chr8:10103583`	`G`	`GTT`	2bp_insertion	frameshift_variant	8	A15,B106,B112,B133,B139,B50,C4,C59
`Chr8:10103586`	`GGC`	`G`	2bp_deletion	frameshift_variant	8	A15,B106,B112,B133,B139,B50,C4,C59
`Chr8:10103643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:10105270`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A23,B90,B92
`Chr8:10105299`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C48
`Chr8:10106097`	`CAG`	`C`	2bp_deletion	frameshift_variant	3	B140,B29,D11
`Chr8:10106097`	`CAG`	`C`	2bp_deletion	CDS_variant	3	B140,B29,D11
`Chr8:10106136`	`AG`	`A`	1bp_deletion	frameshift_variant	3	B140,B29,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057782907.1

834 aa

417

834

Sec10_N

Sec10_HB

PF20667 Sec10_N 95-211 aa PF07393 Sec10_HB 217-824 aa

XP_057782908.1

834 aa

417

834

Sec10_N

Sec10_HB

PF20667 Sec10_N 95-211 aa PF07393 Sec10_HB 217-824 aa

XP_057782909.1

831 aa

416

831

Sec10_N

Sec10_HB

PF20667 Sec10_N 92-208 aa PF07393 Sec10_HB 214-821 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057782907.1`	Pfam	`PF20667`	Sec10_N	Repeat	95	211	9.4e-30	103.8	Exocyst complex component Sec10, N-terminal
`XP_057782907.1`	Pfam	`PF07393`	Sec10_HB	Repeat	217	824	8.6e-146	487.7	Exocyst complex component Sec10-like, alpha-helical bundle
`XP_057782908.1`	Pfam	`PF20667`	Sec10_N	Repeat	95	211	9.4e-30	103.8	Exocyst complex component Sec10, N-terminal
`XP_057782908.1`	Pfam	`PF07393`	Sec10_HB	Repeat	217	824	8.6e-146	487.7	Exocyst complex component Sec10-like, alpha-helical bundle
`XP_057782909.1`	Pfam	`PF20667`	Sec10_N	Repeat	92	208	9.3e-30	103.8	Exocyst complex component Sec10, N-terminal
`XP_057782909.1`	Pfam	`PF07393`	Sec10_HB	Repeat	214	821	8.5e-146	487.7	Exocyst complex component Sec10-like, alpha-helical bundle

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057926925.1
AAAAATCTGTGAAAGCACATCGCAGAAGGAAACTGTTGGGGCAAAATTATTCAACCTTTTATGTTTCACATTTTGTAGTTGTTTTGATCCTGTTGATTGTAGACTATTATACCGGCTTTCGTAGTTCATATACGCAGGCACGAATCACATTCTGCGATTTGCACGAAGCCTCTCTTTCTCTCTCTAGAACTACGTCCCTAGTTCCTTGGTGCTCGATTTTGCTTTGCTGTAAAGCCCCACCCCGTTGGATATCGGAGGAC...

XM_057926924.1
AAAAATCTGTGAAAGCACATCGCAGAAGGAAACTGTTGGGGCAAAATTATTCAACCTTTTATGTTTCACATTTTGTAGTTGTTTTGATCCTGTTGATTGTAGACTATTATACCGGCTTTCGTAGTTCATATACGCAGGCACGAATCACATTCTGCGATTTGCACGAAGCCTCTCTTTCTCTCTCTAGAACTACGTCCCTAGTTCCTTGGTGCTCGATTTTGCTTTGCTGTAAAGCCCCACCCCGTTGGATATCGGAGGAC...

CDS

3 records

下载 CDS FASTA

LOC131000826
ATGGCTCAGATGAAAGAGATTAAAAATGGGACGAGGACTGGGAGATTTTCCAAATCTCCATCAGCTGATCCCTACCCGCTTGTTCTAGACATTAATGACTTTAAGGGGGACTTCTCATTCGATGCACTATTTGGAAACTTGGTTAACGAGCTGCTGCCTTCTTATACCGAAGAAGAAACTGATACTTCTGAAGGCAGTGGTGCAACTGATGCTATGCCCAATGGTCATTTGAATGCAGCAAAAGCAGCCCAAGTGCCATC...

Protein

3 records

下载 Protein FASTA

XP_057782907.1
MAQMKEIKNGTRTGRFSKSPSADPYPLVLDINDFKGDFSFDALFGNLVNELLPSYTEEETDTSEGSGATDAMPNGHLNAAKAAQVPSNPFFPEVDSLLSLFKNSCMQLVDLRKQIEQKLYNDKTEVSAQDSKHRKTLSELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRETASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDIGRQGIDSSVTGNAAASRGLEVAVANLQ...

XP_057782908.1
MAQMKEIKNGTRTGRFSKSPSADPYPLVLDINDFKGDFSFDALFGNLVNELLPSYTEEETDTSEGSGATDAMPNGHLNAAKAAQVPSNPFFPEVDSLLSLFKNSCMQLVDLRKQIEQKLYNDKTEVSAQDSKHRKTLSELEKGVDGLFDSFARLDSRISSVGQTAAKIGDHLQSADAQRETASQTIDLIKYLMEFNSSPGDLMELSPLFSDDSRVAEAASIAQKLRSFAEEDIGRQGIDSSVTGNAAASRGLEVAVANLQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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