Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr08G001314

染色体: Chr08 坐标: 10468061-10474952 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr08G001314
名称SmilChr08G001314
描述caffeoyl-CoA O-methyltransferase 5-like
染色体 / SeqIDChr08 / NC_080394.1
坐标与链方向10468061 - 10474952 / -

ID 对照

NCBI Gene IDLOC131000893
GeneID131000893
locus_tag-
NCBI NameLOC131000893
原始查询LOC131000893

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述caffeoyl-CoA O-methyltransferase 5-like
产物caffeoyl-CoA O-methyltransferase 5-like
ArabidopsisAT4G34050 (CCoAOMT1)
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:829551]
identity=82.7; qcov=0.98; evalue=7.56e-158; confidence=high
RiceOs06g0165800 (ROMT-16)
-
identity=79.6; qcov=0.968; evalue=2.43e-151; confidence=high
GOGO:0008171 (O-methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity)
KEGGsmil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00945 (Stilbenoid, diarylheptanoid and gingerol biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
PfamPF01596 (Methyltransf_3); PF13578 (Methyltransf_24)
InterPro-
eggNOG-
NRGeneID:131000893

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057783016.1
2 Cytoplasm 细胞质 1.00000 XP_057783016.1
3 Chromosome 染色体 0.00000 XP_057783016.1
4 Centromere 着丝粒 0.00000 XP_057783016.1
5 Chromatin 染色质 0.00000 XP_057783016.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr8:10468601 C T EMS_canonical_SNV CDS_variant 1 C86
Chr8:10474728 G A EMS_canonical_SNV CDS_variant 3 B56,B96,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057783016.1
248 aa
N
1
124
248
Methyltransf_3
Methyltransf_24
C
PF01596 Methyltransf_3 36-247 aa PF13578 Methyltransf_24 85-191 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057783016.1 Pfam PF01596 Methyltransf_3 Domain 36 247 6e-96 320.3 O-methyltransferase
XP_057783016.1 Pfam PF13578 Methyltransf_24 Domain 85 191 3e-09 38.4 Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057927033.1
TGAATCCTACTCACCCGCTTCACTGGGACCCACACCCCACCAACCCCAGACCGGGTCAGACCCCGGTCCTATTTCCCAATCACAACGCCGGTCCGACCGTAATTCGACCTTCTATATATCACCTTCCCCCTTCTTTTGCAGGACTAGGGAAAACCCAATAACCCATAATTCTAGAGAGAGTGAGAAAAAAAAAAAAACTTGAATTCAGAAAGAGAAAATGATGACGGAAACTGATGAATCTAACGCAAAGCAACTATCCG...

CDS

1 records

下载 CDS FASTA
LOC131000893
ATGATGACGGAAACTGATGAATCTAACGCAAAGCAACTATCCGGGCATCAGGAGATTGGGCATAAGAGTCTTCTGCAAAGCGATGCTCTCTTCCAGTATATTCTGGAGACTAGCGTGTATCCGAGAGAACACGAGGCCATGAAAGAGCTCAGAGAAATAACTGCAAAGCACCCATGGAATGTCATGGCGACATCTGCTGATGAAGGGCAGTTTCTGAGCATGTTGTTGAAGCTTATTAATGCAAAAAACACAATGGAAAT...

Protein

1 records

下载 Protein FASTA
XP_057783016.1
MMTETDESNAKQLSGHQEIGHKSLLQSDALFQYILETSVYPREHEAMKELREITAKHPWNVMATSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIEKAGVAHKIDFREGPALPILDEMVKDSTKHGTFDFIFVDADKDNYLNYHKRLIELVKVGGVIGYDNTLWNGAVVAPPDAPLKNYIRYYRDFVLELNKVLAADHRIEICQLPVGDGVTLCRRIT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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