Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001278`

染色体: Chr08 坐标: 10180239-10182158 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001278`
名称	SmilChr08G001278
描述	uncharacterized SmilChr08G001278
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	10180239 - 10182158 / `+`

ID 对照

NCBI Gene ID	`LOC131000929`
GeneID	`131000929`
locus_tag	`-`
NCBI Name	`LOC131000929`
原始查询	`LOC131000929`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	zinc finger SWIM domain protein [Source:NCBI gene (formerly Entrezgene);Acc:829537]; symbol=SSN2; hit=AT4G33925; species=arabidopsis; confidence=high
产物	zinc finger SWIM domain protein [Source:NCBI gene (formerly Entrezgene);Acc:829537]; symbol=SSN2; hit=AT4G33925; species=arabidopsis; confidence=high
Arabidopsis	`AT4G33925` (SSN2) zinc finger SWIM domain protein [Source:NCBI gene (formerly Entrezgene);Acc:829537] identity=73.1; qcov=0.937; evalue=6.1e-52; confidence=high
Rice	`Os07g0593200` - identity=64.5; qcov=0.964; evalue=1.57e-48; confidence=medium
GO	GO:0000724 (double-strand break repair via homologous recombination); GO:0008270 (zinc ion binding); GO:0097196 (Shu complex)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131000929

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057783062.1`
2	Cytosol	细胞质基质	0.60000	`XP_057783063.1`
3	Nucleus	细胞核	0.40000	`XP_057783062.1`
4	Chromosome	染色体	0.00000	`XP_057783062.1`
5	Centromere	着丝粒	0.00000	`XP_057783062.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:10181863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B99,C52,C87
`Chr8:10182034`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C71

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927079.1
TAAATTGTTTGTGGGGTAAAATACGAGAATACGGAGAGTTTGGGGCCCAACGAAAAATTATAGACGAGCCCAATCTTTATTTCATTGCCTTCCCTGTTTTTCTTTTCTTTTTTTAGTTTTTGGAATTCTCATTGCCTTCTCTGTAAGAAAGCTGTTTTTCTAAGAACTTGTGGACCAAAATACGAGTGGGTCTGAGATGAGCATTTGTAATTTGGTAGCGGAATCAATTTGGCAAGAGATTGAGTCGACTCATTCAGTGA...

XM_057927080.1
TACGGAGAGTTTGGGGCCCAACGAAAAATTATAGACGAGCCCAATCTTTATTTCATTGCCTTCCCTGTTTTTCTTTTCTTTTTTTAGTTTTTGGAATTCTCATTGCCTTCTCTGTAAGAAAGCTGTTTTTCTAAGAACTTGTGGACCAAAATACGAGTGGGTCTGAGATGAGCATTTGTAATTTGGTAGCGGAATCAATTTGGCAAGAGATTGAGTCGACTCATTCAGTGAGCGATGATCAGCTGTCGACGTGGCTTGCA...

CDS

2 records

下载 CDS FASTA

LOC131000929
ATGAGCATTTGTAATTTGGTAGCGGAATCAATTTGGCAAGAGATTGAGTCGACTCATTCAGTGAGCGATGATCAGCTGTCGACCTTGCATTTTATTTTTGGGAAGAATTTTGAGAGAGCAACGCGGATTTTTGATTTAGGGGGCGTCAAGAGGATTTCTGGTGAGCCCAGTGGCCGATCCATCTTTCAGGTTGTAGGAGAGTCGAGGAAGAAGGAGGAATATCTGTGCTTCCCGGAACACTACTGTAGTTGCTATTCATT...

LOC131000929
ATGATCAGCTGTCGACGTGGCTTGCATTTTATTTTTGGGAAGAATTTTGAGAGAGCAACGCGGATTTTTGATTTAGGGGGCGTCAAGAGGATTTCTGGTGAGCCCAGTGGCCGATCCATCTTTCAGGTTGTAGGAGAGTCGAGGAAGAAGGAGGAATATCTGTGCTTCCCGGAACACTACTGTAGTTGCTATTCATTCTTCTATGATGTTGTCAACAGAGGGGAAGAGCTGTGTTGTAAGCATCAATTAGCTGCAAGACT...

Protein

2 records

下载 Protein FASTA

XP_057783062.1
MSICNLVAESIWQEIESTHSVSDDQLSTLHFIFGKNFERATRIFDLGGVKRISGEPSGRSIFQVVGESRKKEEYLCFPEHYCSCYSFFYDVVNRGEELCCKHQLAARLAASTGTCVHIKVSDEELALLLSKL

XP_057783063.1
MISCRRGLHFIFGKNFERATRIFDLGGVKRISGEPSGRSIFQVVGESRKKEEYLCFPEHYCSCYSFFYDVVNRGEELCCKHQLAARLAASTGTCVHIKVSDEELALLLSKL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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