Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001268`

染色体: Chr08 坐标: 10090863-10093111 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001268`
名称	SmilChr08G001268
描述	transcription initiation factor IIA subunit 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	10090863 - 10093111 / `+`

ID 对照

NCBI Gene ID	`LOC131000931`
GeneID	`131000931`
locus_tag	`-`
NCBI Name	`LOC131000931`
原始查询	`LOC131000931`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	transcription initiation factor IIA subunit 2-like
产物	transcription initiation factor IIA subunit 2-like
Arabidopsis	`AT4G24440` (AT4G24440) transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) [Source:NCBI gene (formerly Entrezgene);Acc:828546] identity=84; qcov=1; evalue=3.56e-64; confidence=high
Rice	`Os05g0107700` (xa5) - identity=84; qcov=1; evalue=6.04e-63; confidence=high
GO	GO:0005672 (transcription factor TFIIA complex); GO:0006367 (transcription initiation at RNA polymerase II promoter); GO:0016251 (RNA polymerase II general transcription initiation factor activity); GO:0017025 (TBP-class protein binding); GO:0051123 (RNA polymerase II preinitiation complex assembly)
KEGG	smil03022 (Basal transcription factors - Salvia miltiorrhiza (redroot sage))
Pfam	PF02268 (TFIIA_gamma_N); PF02751 (TFIIA_gamma_C)
InterPro	-
eggNOG	-
NR	GeneID:131000931

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783066.1`
2	Cytoplasm	细胞质	0.60000	`XP_057783066.1`
3	Chromosome	染色体	0.00000	`XP_057783066.1`
4	Centromere	着丝粒	0.00000	`XP_057783066.1`
5	Chromatin	染色质	0.00000	`XP_057783066.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:10091253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B60,B8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783066.1

106 aa

106

TFIIA_gamma_N

TFIIA_gamma_C

PF02268 TFIIA_gamma_N 4-49 aa PF02751 TFIIA_gamma_C 58-101 aa

XP_057783067.1

106 aa

106

TFIIA_gamma_N

TFIIA_gamma_C

PF02268 TFIIA_gamma_N 4-49 aa PF02751 TFIIA_gamma_C 58-101 aa

XP_057783068.1

106 aa

106

TFIIA_gamma_N

TFIIA_gamma_C

PF02268 TFIIA_gamma_N 4-49 aa PF02751 TFIIA_gamma_C 58-101 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783066.1`	Pfam	`PF02268`	TFIIA_gamma_N	Domain	4	49	6.4e-20	71.6	Transcription initiation factor IIA, gamma subunit, helical domain
`XP_057783066.1`	Pfam	`PF02751`	TFIIA_gamma_C	Domain	58	101	1.2e-22	80.5	Transcription initiation factor IIA, gamma subunit
`XP_057783067.1`	Pfam	`PF02268`	TFIIA_gamma_N	Domain	4	49	6.4e-20	71.6	Transcription initiation factor IIA, gamma subunit, helical domain
`XP_057783067.1`	Pfam	`PF02751`	TFIIA_gamma_C	Domain	58	101	1.2e-22	80.5	Transcription initiation factor IIA, gamma subunit
`XP_057783068.1`	Pfam	`PF02268`	TFIIA_gamma_N	Domain	4	49	6.4e-20	71.6	Transcription initiation factor IIA, gamma subunit, helical domain
`XP_057783068.1`	Pfam	`PF02751`	TFIIA_gamma_C	Domain	58	101	1.2e-22	80.5	Transcription initiation factor IIA, gamma subunit

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927085.1
TTTCGTTTCTCCTTGCTATTCCAGCGCTCGCTATATAATCCCCAATCTTAAAATCTAGGGTATAAAAGGCCCAATTCCTCTCCCTCTCTTTTTTCCCATCTCTCAGTCTCTCTCCCTCCTCGCACGCGGAGAATCTCAGCGAAGATTTCTGGATCGGCAAAGATCAATCAATCGGATAAGCGGTGTGGGTGTAGTAGTACTGTTATTGGAGAAGAATGGCGACCTTCGAGCTGTATCGGAGATCGACGATCGGAATGTGC...

XM_057927083.1
CTCGCTATATAATCCCCAATCTTAAAATCTAGGGTATAAAAGGCCCAATTCCTCTCCCTCTCTTTTTTCCCATCTCTCAGTCTCTCTCCCTCCTCGCACGCGGAGAATCTCAGCGAAGATTTCTGGATCGGCAAAGATCAATCAATCGGATAAGCGGTAGTACTGTTATTGGAGAAGAATGGCGACCTTCGAGCTGTATCGGAGATCGACGATCGGAATGTGCTTGACGGAAACTCTGGATCAGATGGTTTCTGGCGGAA...

CDS

3 records

下载 CDS FASTA

LOC131000931
ATGGCGACCTTCGAGCTGTATCGGAGATCGACGATCGGAATGTGCTTGACGGAAACTCTGGATCAGATGGTTTCTGGCGGAATTCTGAGCCCCGAGCTCGCCATTCAAGTTTTAATTCAATTTGACAAGTCGATGACTGAAGCTCTAGAGACTGAGGTGAAGAGCAAGGTTTCCATTAAGGGACATCTTCATACCTATCGATTCTGTGACAATGTGTGGACTTTCATTTTACAAAATGCTCAGCTGAAAAGCGAGGAAGG...

Protein

3 records

下载 Protein FASTA

XP_057783066.1
MATFELYRRSTIGMCLTETLDQMVSGGILSPELAIQVLIQFDKSMTEALETEVKSKVSIKGHLHTYRFCDNVWTFILQNAQLKSEEGQETVDSVKIVACDSKLLTQ

XP_057783067.1
MATFELYRRSTIGMCLTETLDQMVSGGILSPELAIQVLIQFDKSMTEALETEVKSKVSIKGHLHTYRFCDNVWTFILQNAQLKSEEGQETVDSVKIVACDSKLLTQ

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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