Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004278`

染色体: Chr01 坐标: 61005525-61008425 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004278`
名称	SmilChr01G004278
描述	zinc finger CCCH domain-containing protein 14-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61005525 - 61008425 / `-`

ID 对照

NCBI Gene ID	`LOC131000948`
GeneID	`131000948`
locus_tag	`-`
NCBI Name	`LOC131000948`
原始查询	`LOC131000948`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger CCCH domain-containing protein 14-like
产物	zinc finger CCCH domain-containing protein 14-like
Arabidopsis	`AT5G06770` (AT5G06770) KH domain-containing protein / zinc finger (CCCH type) family protein [Source:NCBI gene (formerly Entrezgene);Acc:830566] identity=55.8; qcov=0.814; evalue=2.35e-65; confidence=high
Rice	`Os02g0194200` (OsC3H14) - identity=61; qcov=1.04; evalue=9.91e-96; confidence=high
GO	GO:0003729 (mRNA binding); GO:0046872 (metal ion binding)
KEGG	-
Pfam	PF00013 (KH_1); PF00642 (zf-CCCH); PF14608 (zf-CCCH_2); PF18044 (zf-CCCH_4)
InterPro	-
eggNOG	-
NR	GeneID:131000948

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783086.1`
2	Cytoplasm	细胞质	1.00000	`XP_057783092.1`
3	Cytoplasmic granule	细胞质颗粒	1.00000	`XP_057783092.1`
4	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	1.00000	`XP_057783092.1`
5	Stress granule	Stress granule	0.80000	`XP_057783092.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61005780`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B112,B75,B77,B94
`Chr1:61005786`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr1:61005836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A25,B55,C27
`Chr1:61005887`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C1,C22,C51,C67
`Chr1:61006165`	`GT`	`G`	1bp_deletion	frameshift_variant	121	A10,A11,A13,A2,A20,A21,A23,A24,A25,A4,A7,A8,A9,B100,B101,B103,B105,B106,B107,B108,B109,B112,B113,B114,B120,B125,B127,B128,B129,B130,B135,B136,B137,B140,B16,B18,B19,B21,B22,B23,B27,B3,B32,B34,B35,B37,B40,B42,B43,B48,B50,B54,B55,B57,B61,B63,B65,B67,B7,B70,B71,B72,B74,B77,B78,B8,B81,B82,B84,B9,B98,C1,C10,C11,C12,C14,C17,C19,C21,C24,C25,C27,C30,C31,C32,C36,C38,C40,C41,C42,C43,C45,C46,C47,C5,C50,C55,C57,C59,C60,C62,C63,C66,C67,C68,C69,C71,C73,C74,C75,C79,C81,C83,C85,C9,D1,D10,D11,D4,D8,D9
`Chr1:61006187`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B35,C65,C78
`Chr1:61006283`	`AT`	`A`	1bp_deletion	frameshift_variant	3	B114,B27,B57
`Chr1:61006283`	`AT`	`A`	1bp_deletion	CDS_variant	3	B114,B27,B57
`Chr1:61006304`	`TGC`	`T`	2bp_deletion	frameshift_variant	150	A1,A15,A16,A19,A20,A21,A22,A23,A24,A25,A9,B1,B10,B100,B101,B102,B105,B106,B107,B108,B110,B111,B113,B115,B12,B120,B122,B123,B125,B126,B127,B13,B130,B131,B134,B136,B138,B139,B14,B140,B15,B18,B2,B20,B21,B22,B23,B25,B26,B27,B28,B30,B31,B33,B36,B37,B38,B39,B40,B41,B42,B43,B44,B45,B46,B47,B50,B51,B56,B57,B58,B59,B60,B61,B62,B63,B64,B66,B68,B69,B7,B72,B73,B77,B78,B79,B83,B85,B86,B88,B91,B95,B96,B99,C1,C12,C15,C16,C2,C21,C22,C24,C26,C27,C29,C3,C30,C32,C33,C34,C38,C4,C40,C41,C42,C44,C46,C47,C5,C50,C51,C52,C54,C55,C57,C58,C6,C60,C62,C63,C64,C65,C66,C68,C7,C70,C73,C74,C76,C77,C79,C8,C86,D1,D10,D2,D3,D4,D5,D8
`Chr1:61006362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B114,B34,B37,C49
`Chr1:61006381`	`CAA`	`C`	2bp_deletion	frameshift_variant	113	A1,A13,A15,A16,A19,A2,A20,A21,A22,A9,B10,B101,B107,B108,B109,B111,B113,B115,B117,B118,B119,B120,B122,B123,B125,B127,B13,B130,B131,B133,B136,B138,B139,B14,B15,B18,B2,B20,B21,B25,B26,B27,B28,B30,B33,B35,B36,B37,B38,B39,B41,B43,B44,B46,B47,B50,B51,B56,B58,B59,B62,B63,B64,B66,B69,B73,B76,B79,B83,B85,B86,B89,B91,B95,B96,B99,C1,C12,C15,C16,C21,C26,C27,C29,C3,C33,C34,C4,C40,C41,C50,C51,C52,C55,C58,C6,C60,C62,C63,C64,C65,C66,C70,C73,C74,C76,C77,C78,C79,C86,D2,D4,D5
`Chr1:61007351`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783086.1

298 aa

149

298

zf-CCCH_2

KH_1

zf-CCCH

zf-CCCH_4

zf-CCCH_2

PF14608 zf-CCCH_2 39-59 aa PF14608 zf-CCCH_2 106-126 aa PF00013 KH_1 173-237 aa PF00642 zf-CCCH 265-289 aa PF18044 zf-CCCH_4 268-288 aa PF14608 zf-CCCH_2 270-289 aa

XP_057783092.1

253 aa

126

253

zf-CCCH_2

KH_1

zf-CCCH

zf-CCCH_4

zf-CCCH_2

PF14608 zf-CCCH_2 4-14 aa PF14608 zf-CCCH_2 61-81 aa PF00013 KH_1 128-192 aa PF00642 zf-CCCH 220-244 aa PF18044 zf-CCCH_4 223-243 aa PF14608 zf-CCCH_2 225-244 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783086.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	39	59	7.4e-08	33.3	RNA-binding, Nab2-type zinc finger
`XP_057783086.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	106	126	7.4e-08	33.3	RNA-binding, Nab2-type zinc finger
`XP_057783086.1`	Pfam	`PF00013`	KH_1	Domain	173	237	1.7e-13	50.8	KH domain
`XP_057783086.1`	Pfam	`PF00642`	zf-CCCH	Family	265	289	2.9e-17	62.8	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057783086.1`	Pfam	`PF18044`	zf-CCCH_4	Domain	268	288	7.4e-11	42.3	CCCH-type zinc finger
`XP_057783086.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	270	289	7.4e-08	33.3	RNA-binding, Nab2-type zinc finger
`XP_057783092.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	4	14	1.1e-07	32.8	RNA-binding, Nab2-type zinc finger
`XP_057783092.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	61	81	1.1e-07	32.8	RNA-binding, Nab2-type zinc finger
`XP_057783092.1`	Pfam	`PF00013`	KH_1	Domain	128	192	1.3e-13	51.2	KH domain
`XP_057783092.1`	Pfam	`PF00642`	zf-CCCH	Family	220	244	6.1e-16	58.6	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
`XP_057783092.1`	Pfam	`PF18044`	zf-CCCH_4	Domain	223	243	8.3e-10	38.9	CCCH-type zinc finger
`XP_057783092.1`	Pfam	`PF14608`	zf-CCCH_2	Domain	225	244	1.1e-07	32.8	RNA-binding, Nab2-type zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927103.1
CTTATCTGAAAAATCGCGCGCGGAATCCAAAATTTCTTAACCAAATTTAATACACAGAAATATCCCATAGAAAATTCACCATCGCTAAAATTTTATATCAATATTGTATTATTTTGCTGCATCTTCCCGCTTTGGGAAAACCCTAGCTAGATTTGGATTCGTCCAGTTATTTCTCAAAGATTCCAACTTTCACCGAATTCTGCATCACAGATCCTTTTTCTGGTGGTTTTAGAATCGAATATTCGGCTTTTTTGTTTTGA...

XM_057927109.1
AATACACAGAAATATCCCATAGAAAATTCACCATCGCTAAAATTTTATATCAATATTGTATTATTTTGCTGCATCTTCCCGCTTTGGGAAAACCCTAGCTAGATTTGGATTCGTCCAGTTATTTCTCAAAGATTCCAACTTTCACCGAATTCTGCATCACAGATCCTTTTTCTGGTGGTTTTAGAATCGAATATTCGGCTTTTTTGTTTTGAGTTTGAGCTTCGATCTGCGAGCTTCGAAGCTATGGATATTCGCAAGAG...

CDS

2 records

下载 CDS FASTA

LOC131000948
ATGGATATTCGCAAGAGAGCCAGAGGTGAATTCGACCCGAATGCTAATGGTGGATCCAAGAGATCTAAGCCAGAAATGGACTCCTTATCAGGTGGTATAGGAAGCAAATCGAAGCCTTGCACGAAGTTCTTCAGCATGGCTGGTTGCCCCTTTGGTGAGAATTGCCACTTCCTTCACTTTGTCCCTGGTGGCTACAAAGCCGTAGCCCAGATTATGAATCTCGCTCCTGCTCCTGCTCCTGCCTTTAAGACACCAGCAGG...

LOC131000948
ATGGCTGGTTGCCCCTTTGGTGAGAATTGCCACTTCCTTCACTTTGTCCCTGGTGGCTACAAAGCCGTAGCCCAGATTATGAATCTCGCTCCTGCTCCTGCTCCTGCCTTTAAGACACCAGCAGGGCCGCCGCCAATCCAGAATGGTTCATCTCCAGCCGCTGCTGTAAAGACCAAATTATGCAACAAATTCAACAGTGCAGAAGGTTGCAAGTTCAACGACAAGTGCCACTTTGCTCACGGAGAGAGGGAACTTGGCAG...

Protein

2 records

下载 Protein FASTA

XP_057783086.1
MDIRKRARGEFDPNANGGSKRSKPEMDSLSGGIGSKSKPCTKFFSMAGCPFGENCHFLHFVPGGYKAVAQIMNLAPAPAPAFKTPAGPPPIQNGSSPAAAVKTKLCNKFNSAEGCKFNDKCHFAHGERELGRPIAHSQPQEDARAMGSVPPYFGARADPPVQGLAAGFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHETDPGLRNIELEGTFEQIKQASTMVRELIVSIGAGNAPGKTFGGGGGPPT...

XP_057783092.1
MAGCPFGENCHFLHFVPGGYKAVAQIMNLAPAPAPAFKTPAGPPPIQNGSSPAAAVKTKLCNKFNSAEGCKFNDKCHFAHGERELGRPIAHSQPQEDARAMGSVPPYFGARADPPVQGLAAGFGASATAKISVDASLAGAIIGKGGVNSKQICRQTGAKLSIRDHETDPGLRNIELEGTFEQIKQASTMVRELIVSIGAGNAPGKTFGGGGGPPTPGSNFKTKLCENFSKGSCTFGDRCHFAHGAAELRKTGF

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器