Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001397`

染色体: Chr08 坐标: 11197403-11205242 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001397`
名称	SmilChr08G001397
描述	coatomer subunit gamma-2
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11197403 - 11205242 / `+`

ID 对照

NCBI Gene ID	`LOC131000949`
GeneID	`131000949`
locus_tag	`-`
NCBI Name	`LOC131000949`
原始查询	`LOC131000949`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	coatomer subunit gamma-2
产物	coatomer subunit gamma-2
Arabidopsis	`AT4G34450` (AT4G34450) coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP [Source:NCBI gene (formerly Entrezgene);Acc:829596] identity=84.2; qcov=1; evalue=0; confidence=high
Rice	`Os07g0201100` - identity=85.4; qcov=1; evalue=0; confidence=high
GO	GO:0000139 (Golgi membrane); GO:0005198 (structural molecule activity); GO:0005783 (endoplasmic reticulum); GO:0005793 (endoplasmic reticulum-Golgi intermediate compartment); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0006891 (intra-Golgi vesicle-mediated transport); GO:0009306 (protein secretion); GO:0030126 (COPI vesicle coat)
KEGG	-
Pfam	PF01602 (Adaptin_N); PF08752 (COP-gamma_platf); PF12717 (Cnd1); PF16381 (Coatomer_g_Cpla)
InterPro	-
eggNOG	-
NR	GeneID:131000949

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	0.80000	`XP_057783084.1`
2	Clathrin-coated vesicle	Clathrin-coated vesicle	0.60000	`XP_057783084.1`
3	Cytosol	细胞质基质	0.60000	`XP_057783084.1`
4	Trans-golgi network	Trans-golgi network	0.40000	`XP_057783084.1`
5	Cytoplasm	细胞质	0.20000	`XP_057783084.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11198789`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B134,D7
`Chr8:11199501`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr8:11199615`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B32,C62
`Chr8:11200812`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B8,C28,C52
`Chr8:11202189`	`TTG`	`T`	2bp_deletion	frameshift_variant	1	B70
`Chr8:11202189`	`TTG`	`T`	2bp_deletion	CDS_variant	1	B70
`Chr8:11203253`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B66,B77,B8,C19,D10
`Chr8:11203271`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr8:11203313`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C39
`Chr8:11203359`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr8:11203602`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B12
`Chr8:11203677`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783084.1

888 aa

444

888

Adaptin_N

Cnd1

COP-gamma_platf

Coatomer_g_Cpla

PF01602 Adaptin_N 27-541 aa PF12717 Cnd1 123-219 aa PF08752 COP-gamma_platf 623-768 aa PF16381 Coatomer_g_Cpla 771-885 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783084.1`	Pfam	`PF01602`	Adaptin_N	Repeat	27	541	3.8e-141	471.9	Adaptin N terminal region
`XP_057783084.1`	Pfam	`PF12717`	Cnd1	Repeat	123	219	2.5e-13	51.1	non-SMC mitotic condensation complex subunit 1
`XP_057783084.1`	Pfam	`PF08752`	COP-gamma_platf	Domain	623	768	3.2e-54	183.9	Coatomer gamma subunit appendage platform subdomain
`XP_057783084.1`	Pfam	`PF16381`	Coatomer_g_Cpla	Domain	771	885	7.9e-37	126.6	Coatomer subunit gamma-1 C-terminal appendage platform

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927101.1
TTTAAACACGGAATACCGAATTTACCCTTCGCAATCGCACCATTGACCCCTCACTAACCTTATTAACATCACTCAAGTAAATCTTCGGTTGTTCGTCAAGCTGCATCTGGGAACCCAGAGAGAGGGAGAGAGATCTACACTCCATTCTACACAAATAAATAGAAACTGCGTTGGCAGATTTGCTAATTCTCCTCTTGTACACTTATATTCAGGCACAGGCAACAATTAACCTTATTAGTTTGTTTTCAGTTCTCCTACGC...

CDS

1 records

下载 CDS FASTA

LOC131000949
ATGGCTCAACCGCTTGTCAAGAAAGATGATGATCGCGATGAAGAAGCTGATTACTCGCCATTTCTGGGGATTGAGAAGGGTGCGGTATTACAGGAAGCTAGGGTTTTCAATGACCCTCAGTTAGATGCTAGGCGATGCTCACAGGTCATCACGAAGCTTTTGTATCTTCTTAATCAGGGCGACTCATTCACAAAGGTCGAGGCCACAGAAGTATTTTTTGCTGTCACAAAACTGTTTCAGTCTAGAGATAATGGTTTGAG...

Protein

1 records

下载 Protein FASTA

XP_057783084.1
MAQPLVKKDDDRDEEADYSPFLGIEKGAVLQEARVFNDPQLDARRCSQVITKLLYLLNQGDSFTKVEATEVFFAVTKLFQSRDNGLRRMVYLIIKDLSPSADEVIIVTSSLMKDMNSRTDMYRANAIRVLCRITDGTLLTQIERYLKQAIVDKNPVVASAALVSGIHLLQTTPEIVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTKGTVRSPLAQCLLIRYTSQVIRETGVNSQTGDRPFYDYL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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