当前解析结果
SmilChr08G001416| 统一新 Gene ID | SmilChr08G001416 |
|---|---|
| 名称 | SmilChr08G001416 |
| 描述 | beta-galactosidase 3-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 11335875 - 11340755 / - |
| NCBI Gene ID | LOC131000962 |
|---|---|
| GeneID | 131000962 |
| locus_tag | - |
| NCBI Name | LOC131000962 |
| 原始查询 | LOC131000962 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | beta-galactosidase 3-like |
| 产物 | beta-galactosidase 3-like |
| Arabidopsis | AT4G36360 (BGAL3)beta-galactosidase 3 [Source:NCBI gene (formerly Entrezgene);Acc:829788] identity=70.3; qcov=0.989; evalue=0; confidence=high |
| Rice | Os03g0165400 (OsBgal1)- identity=70.3; qcov=0.971; evalue=0; confidence=high |
| GO | GO:0004565 (beta-galactosidase activity); GO:0005618 (cell wall); GO:0005773 (vacuole); GO:0005975 (carbohydrate metabolic process) |
| KEGG | - |
| Pfam | PF01301 (Glyco_hydro_35); PF02449 (Glyco_hydro_42); PF17834 (GHD); PF21467 (BetaGal_gal-bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000962 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.60000 | XP_057783098.1 |
| 2 | Secreted | 分泌到胞外 | 0.40000 | XP_057783098.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057783098.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783098.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783098.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:11336307 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:11336721 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr8:11336727 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr8:11336763 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:11336767 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr8:11336957 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C75,D6 |
Chr8:11337160 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B66,B8 |
Chr8:11337412 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B58,C17,C31 |
Chr8:11337516 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,C82 |
Chr8:11337600 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr8:11337621 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A19,B109 |
Chr8:11337948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B88,B97 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783098.1PF01301
Glyco_hydro_35 32-336 aa
PF02449
Glyco_hydro_42 54-186 aa
PF17834
GHD 359-412 aa
PF21467
BetaGal_gal-bd 618-703 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783098.1 |
Pfam | PF01301 |
Glyco_hydro_35 | Domain | 32 | 336 | 8.3e-125 | 417.3 | Glycosyl hydrolases family 35 |
XP_057783098.1 |
Pfam | PF02449 |
Glyco_hydro_42 | Domain | 54 | 186 | 2.3e-05 | 24.6 | Beta-galactosidase |
XP_057783098.1 |
Pfam | PF17834 |
GHD | Domain | 359 | 412 | 1.7e-22 | 79.6 | Beta-sandwich domain in beta galactosidase |
XP_057783098.1 |
Pfam | PF21467 |
BetaGal_gal-bd | Domain | 618 | 703 | 4.2e-35 | 120.4 | Beta-galactosidase, galactose-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。