当前解析结果
SmilChr08G001421| 统一新 Gene ID | SmilChr08G001421 |
|---|---|
| 名称 | SmilChr08G001421 |
| 描述 | probable receptor-like protein kinase At2g21480 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 11366918 - 11369907 / - |
| NCBI Gene ID | LOC131000967 |
|---|---|
| GeneID | 131000967 |
| locus_tag | - |
| NCBI Name | LOC131000967 |
| 原始查询 | LOC131000967 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable receptor-like protein kinase At2g21480 |
| 产物 | probable receptor-like protein kinase At2g21480 |
| Arabidopsis | AT4G39110 (AT4G39110)Malectin/receptor-like protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830066] identity=62.3; qcov=0.974; evalue=0; confidence=high |
| Rice | Os06g0126250 (RLCK193)- identity=63.6; qcov=0.872; evalue=0; confidence=high |
| GO | GO:0004714 (transmembrane receptor protein tyrosine kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0009506 (plasmodesma); GO:0046777 (protein autophosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF12819 (Malectin_like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000967 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057783101.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057783101.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057783101.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057783101.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057783101.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:11367175 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | A3 |
Chr8:11367175 |
GC |
G |
1bp_deletion | CDS_variant | 1 | A3 |
Chr8:11367254 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr8:11367415 |
TG |
T |
1bp_deletion | frameshift_variant | 2 | B104,B125 |
Chr8:11367415 |
TG |
T |
1bp_deletion | CDS_variant | 2 | B104,B125 |
Chr8:11367555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C55 |
Chr8:11367566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B140,C82,D11 |
Chr8:11367581 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr8:11367743 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr8:11368364 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,B112,B32,C62,D11 |
Chr8:11368436 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr8:11368448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A2,B140 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783101.1PF12819
Malectin_like 43-398 aa
PF11721
Malectin 302-357 aa
PF00069
Pkinase 513-778 aa
PF07714
PK_Tyr_Ser-Thr 517-709 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783101.1 |
Pfam | PF12819 |
Malectin_like | Domain | 43 | 398 | 1e-25 | 91.5 | Malectin-like domain |
XP_057783101.1 |
Pfam | PF11721 |
Malectin | Domain | 302 | 357 | 4.2e-08 | 34.1 | Malectin domain |
XP_057783101.1 |
Pfam | PF00069 |
Pkinase | Domain | 513 | 778 | 2.9e-42 | 145.6 | Protein kinase domain |
XP_057783101.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 517 | 709 | 9.1e-46 | 157.0 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。