Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001423`

染色体: Chr08 坐标: 11375543-11377567 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001423`
名称	SmilChr08G001423
描述	pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11375543 - 11377567 / `-`

ID 对照

NCBI Gene ID	`LOC131000969`
GeneID	`131000969`
locus_tag	`-`
NCBI Name	`LOC131000969`
原始查询	`LOC131000969`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like
产物	pentatricopeptide repeat-containing protein At3g62470%2C mitochondrial-like
Arabidopsis	`AT3G62470` (AT3G62470) Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:825421] identity=63.8; qcov=0.799; evalue=0; confidence=high
Rice	`Os05g0355200` - identity=50.8; qcov=0.823; evalue=7.89e-174; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro	-
eggNOG	-
NR	GeneID:131000969

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.80000	`XP_057783105.1`
2	Chloroplast	叶绿体	0.40000	`XP_057783105.1`
3	Nucleus	细胞核	0.00000	`XP_057783105.1`
4	Chromosome	染色体	0.00000	`XP_057783105.1`
5	Centromere	着丝粒	0.00000	`XP_057783105.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11375695`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B100,B123
`Chr8:11375699`	`TG`	`T`	1bp_deletion	frameshift_variant	173	A10,A11,A15,A18,A2,A20,A22,A23,A24,A25,A3,A6,A7,A8,A9,B10,B100,B101,B102,B103,B105,B106,B107,B108,B11,B110,B114,B117,B118,B119,B120,B121,B122,B123,B124,B125,B127,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B14,B16,B18,B19,B20,B22,B25,B26,B27,B28,B3,B30,B31,B33,B34,B35,B36,B37,B38,B39,B4,B40,B42,B43,B44,B45,B47,B48,B49,B5,B50,B52,B53,B54,B57,B58,B6,B61,B62,B63,B65,B66,B67,B69,B7,B70,B71,B75,B77,B78,B79,B82,B83,B86,B88,B89,B9,B91,B93,B94,B95,B97,B98,C1,C11,C13,C16,C20,C22,C23,C24,C26,C27,C28,C29,C32,C33,C35,C36,C38,C39,C41,C42,C43,C44,C45,C46,C47,C48,C5,C50,C51,C52,C53,C55,C56,C57,C6,C60,C61,C62,C64,C65,C66,C67,C68,C69,C7,C70,C72,C74,C76,C77,C78,C79,C8,C83,C85,C9,D11,D2,D3,D4,D5,D8,D9
`Chr8:11375702`	`G`	`GA`	1bp_insertion	frameshift_variant	159	A10,A11,A15,A2,A20,A22,A23,A24,A25,A6,A7,A8,A9,B10,B100,B101,B103,B105,B106,B107,B108,B11,B110,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B127,B129,B13,B130,B131,B132,B134,B135,B136,B137,B138,B14,B16,B18,B19,B22,B25,B26,B27,B28,B3,B30,B31,B33,B34,B35,B36,B37,B38,B39,B40,B42,B43,B44,B45,B47,B49,B52,B53,B54,B57,B58,B6,B62,B63,B65,B66,B67,B69,B7,B70,B71,B75,B77,B78,B79,B82,B83,B86,B88,B89,B9,B91,B94,B97,B98,C1,C11,C13,C16,C20,C22,C23,C24,C26,C27,C28,C29,C32,C33,C35,C36,C38,C39,C4,C41,C42,C44,C45,C46,C47,C5,C50,C51,C52,C55,C56,C57,C6,C60,C61,C62,C64,C65,C66,C67,C69,C7,C70,C72,C74,C76,C77,C78,C79,C8,C83,C85,C9,D11,D2,D3,D4,D5,D8,D9
`Chr8:11375718`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B3,B63,C57
`Chr8:11375738`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C19
`Chr8:11375940`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr8:11376095`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B77,C19
`Chr8:11376202`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B46,C14,D11
`Chr8:11376355`	`T`	`TA`	1bp_insertion	frameshift_variant	188	A1,A11,A13,A14,A15,A16,A18,A19,A21,A22,A23,A25,A4,A5,A6,A8,B1,B10,B100,B101,B103,B104,B105,B106,B108,B109,B11,B110,B111,B112,B113,B115,B117,B118,B119,B12,B122,B123,B124,B125,B126,B127,B128,B13,B130,B131,B133,B135,B136,B138,B139,B14,B140,B15,B17,B18,B19,B2,B21,B23,B24,B25,B26,B27,B29,B3,B31,B32,B34,B37,B41,B46,B47,B49,B51,B52,B53,B55,B56,B58,B59,B6,B60,B63,B64,B65,B68,B70,B71,B72,B73,B74,B76,B77,B8,B80,B81,B83,B84,B85,B87,B88,B9,B90,B91,B92,B96,B97,B99,C1,C10,C11,C12,C13,C14,C15,C16,C17,C18,C19,C2,C20,C21,C22,C23,C25,C27,C28,C3,C30,C31,C34,C35,C36,C37,C38,C4,C40,C41,C42,C44,C45,C46,C47,C49,C5,C52,C54,C55,C57,C58,C59,C6,C60,C62,C63,C64,C65,C66,C67,C69,C7,C70,C71,C73,C74,C75,C76,C77,C8,C80,C81,C82,C83,C84,C85,C86,C87,C9,D1,D10,D11,D3,D4,D6,D7,D8,D9
`Chr8:11376410`	`TC`	`T`	1bp_deletion	frameshift_variant	176	A10,A15,A18,A2,A20,A22,A23,A24,A25,A3,A6,A7,A8,A9,B10,B100,B101,B102,B103,B105,B106,B107,B108,B11,B110,B111,B112,B114,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B127,B129,B13,B130,B131,B132,B133,B134,B136,B137,B138,B14,B16,B18,B19,B20,B21,B22,B25,B26,B27,B28,B3,B30,B31,B33,B34,B35,B36,B37,B38,B39,B4,B40,B42,B43,B44,B45,B47,B48,B49,B5,B50,B52,B53,B54,B57,B58,B6,B61,B62,B63,B65,B66,B67,B69,B7,B70,B71,B75,B77,B78,B79,B8,B82,B83,B86,B89,B91,B93,B94,B95,B97,B98,C1,C11,C12,C13,C16,C20,C22,C23,C24,C26,C27,C28,C29,C31,C32,C33,C35,C36,C39,C4,C41,C42,C43,C44,C45,C46,C47,C48,C5,C50,C51,C53,C54,C55,C56,C57,C6,C60,C61,C62,C64,C65,C66,C67,C68,C69,C7,C70,C72,C74,C76,C78,C79,C8,C83,C85,C9,D11,D2,D3,D4,D5,D8,D9
`Chr8:11376411`	`C`	`CT`	1bp_insertion	frameshift_variant	1	B76
`Chr8:11376411`	`C`	`CT`	1bp_insertion	CDS_variant	1	B76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783105.1

581 aa

290

581

PPR

PPR_2

PPR

PPR_2

PPR

PPR_3

PPR_2

PPR

TPR_24

PPR_1

PPR

PPR_2

PPR_long

PPR_3

PPR_2

PPR

PPR_3

PPR

PPR_2

PPR

PPR_3

PPR

PF01535 PPR 182-212 aa PF13041 PPR_2 251-295 aa PF01535 PPR 254-276 aa PF13041 PPR_2 282-331 aa PF01535 PPR 286-315 aa PF13812 PPR_3 309-362 aa PF13041 PPR_2 317-366 aa PF01535 PPR 320-349 aa PF23276 TPR_24 339-450 aa PF12854 PPR_1 348-380 aa PF01535 PPR 356-385 aa PF13041 PPR_2 356-400 aa PF17177 PPR_long 358-527 aa PF13812 PPR_3 377-434 aa PF13041 PPR_2 387-433 aa PF01535 PPR 391-420 aa PF13812 PPR_3 410-469 aa PF01535 PPR 426-455 aa PF13041 PPR_2 426-469 aa PF13041 PPR_2 457-505 aa PF01535 PPR 461-490 aa PF13812 PPR_3 481-535 aa PF01535 PPR 496-524 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783105.1`	Pfam	`PF01535`	PPR	Repeat	182	212	8.7e-51	167.4	PPR repeat
`XP_057783105.1`	Pfam	`PF13041`	PPR_2	Repeat	251	295	2.1e-76	252.5	PPR repeat family
`XP_057783105.1`	Pfam	`PF01535`	PPR	Repeat	254	276	8.7e-51	167.4	PPR repeat
`XP_057783105.1`	Pfam	`PF13041`	PPR_2	Repeat	282	331	2.1e-76	252.5	PPR repeat family
`XP_057783105.1`	Pfam	`PF01535`	PPR	Repeat	286	315	8.7e-51	167.4	PPR repeat
`XP_057783105.1`	Pfam	`PF13812`	PPR_3	Repeat	309	362	3.1e-36	124.0	Pentatricopeptide repeat domain
`XP_057783105.1`	Pfam	`PF13041`	PPR_2	Repeat	317	366	2.1e-76	252.5	PPR repeat family
`XP_057783105.1`	Pfam	`PF01535`	PPR	Repeat	320	349	8.7e-51	167.4	PPR repeat
`XP_057783105.1`	Pfam	`PF23276`	TPR_24	Repeat	339	450	6.5e-16	59.2	Pentatricopeptide repeat-containing protein
`XP_057783105.1`	Pfam	`PF12854`	PPR_1	Repeat	348	380	1.7e-40	137.1	PPR repeat
`XP_057783105.1`	Pfam	`PF01535`	PPR	Repeat	356	385	8.7e-51	167.4	PPR repeat
`XP_057783105.1`	Pfam	`PF13041`	PPR_2	Repeat	356	400	2.1e-76	252.5	PPR repeat family
`XP_057783105.1`	Pfam	`PF17177`	PPR_long	Repeat	358	527	6e-24	85.3	Pentacotripeptide-repeat region of PRORP
`XP_057783105.1`	Pfam	`PF13812`	PPR_3	Repeat	377	434	3.1e-36	124.0	Pentatricopeptide repeat domain
`XP_057783105.1`	Pfam	`PF13041`	PPR_2	Repeat	387	433	2.1e-76	252.5	PPR repeat family
`XP_057783105.1`	Pfam	`PF01535`	PPR	Repeat	391	420	8.7e-51	167.4	PPR repeat
`XP_057783105.1`	Pfam	`PF13812`	PPR_3	Repeat	410	469	3.1e-36	124.0	Pentatricopeptide repeat domain
`XP_057783105.1`	Pfam	`PF01535`	PPR	Repeat	426	455	8.7e-51	167.4	PPR repeat
`XP_057783105.1`	Pfam	`PF13041`	PPR_2	Repeat	426	469	2.1e-76	252.5	PPR repeat family
`XP_057783105.1`	Pfam	`PF13041`	PPR_2	Repeat	457	505	2.1e-76	252.5	PPR repeat family
`XP_057783105.1`	Pfam	`PF01535`	PPR	Repeat	461	490	8.7e-51	167.4	PPR repeat
`XP_057783105.1`	Pfam	`PF13812`	PPR_3	Repeat	481	535	3.1e-36	124.0	Pentatricopeptide repeat domain
`XP_057783105.1`	Pfam	`PF01535`	PPR	Repeat	496	524	8.7e-51	167.4	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927122.1
TAGGAGTAGTATTGTGGACTGAAGGGAAAAGGAGTGGAGTCCTGCCGCCACCAAACGTTAGCTGAGAGATCTTCTCAAATCGAAATCTGAAGCTTCCTCATGCCGCCATTGCTTCACTTTCACAGTCTTGATCCTATTTAATGGCTTTCCAATGGCTTTTCATTTAAGAAACTCAAGGATTCCCAAACCCCCTAATCGAAATGACGGACTATTCGCCGCATCGCGCTCTCCCGGAGAGGAAGTCCCGTTACGACACCGGC...

CDS

1 records

下载 CDS FASTA

LOC131000969
ATGGCTTTTCATTTAAGAAACTCAAGGATTCCCAAACCCCCTAATCGAAATGACGGACTATTCGCCGCATCGCGCTCTCCCGGAGAGGAAGTCCCGTTACGACACCGGCGAGAAGCTCAAGGAAAGCAAGCTCAAGGTAGCTCTCTGCCCTTGTATCTTTTGCTTCATTCTTTTACTGCTAGTCGCATCAATCGTGCTCACCCTCAAATTCCGTCTCTACTGCCACACTCCACTTCACTCCCTCCTCTTCCACAAAGCCT...

Protein

1 records

下载 Protein FASTA

XP_057783105.1
MAFHLRNSRIPKPPNRNDGLFAASRSPGEEVPLRHRREAQGKQAQGSSLPLYLLLHSFTASRINRAHPQIPSLLPHSTSLPPLPQSLPLANSFLPQFRPFCKSVGSVSSDSEFEEEVERVCRVIDETFGVDRNMEAVLDECGVDLSHELVVCVLRRFKYARKPAFRFFNWAADQPGYAHDCSTYNAMVDLLGKNRQFESMVSMLQEMGEKGLLSLETFIVSIKAFASAKERRKAVGVLDLMSKYKFRIGVEAINCLLDAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器