Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004280`

染色体: Chr01 坐标: 61012454-61025703 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004280`
名称	SmilChr01G004280
描述	protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	61012454 - 61025703 / `-`

ID 对照

NCBI Gene ID	`LOC131000974`
GeneID	`131000974`
locus_tag	`-`
NCBI Name	`LOC131000974`
原始查询	`LOC131000974`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
产物	protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1
Arabidopsis	`AT3G12810` (PIE1) SNF2 domain-containing protein / helicase domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:820463] identity=59.5; qcov=1.03; evalue=0; confidence=high
Rice	`Os02g0689800` - identity=52; qcov=0.549; evalue=0; confidence=medium
GO	GO:0000812 (Swr1 complex); GO:0005524 (ATP binding); GO:0016887 (ATP hydrolysis activity); GO:0042393 (histone binding); GO:0140658 (ATP-dependent chromatin remodeler activity)
KEGG	smil03082 (ATP-dependent chromatin remodeling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00176 (SNF2-rel_dom); PF00270 (DEAD); PF00271 (Helicase_C); PF04851 (ResIII); PF07529 (HSA)
InterPro	-
eggNOG	-
NR	GeneID:131000974

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783111.1`
2	Chromosome	染色体	0.00000	`XP_057783111.1`
3	Centromere	着丝粒	0.00000	`XP_057783111.1`
4	Chromatin	染色质	0.00000	`XP_057783111.1`
5	Telomere	端粒	0.00000	`XP_057783111.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:61013025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A13,C8
`Chr1:61013121`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C50
`Chr1:61013133`	`GC`	`G`	1bp_deletion	frameshift_variant	196	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A21,A22,A23,A24,A25,B1,B10,B100,B102,B103,B104,B106,B107,B108,B11,B110,B111,B112,B113,B114,B115,B117,B118,B120,B121,B123,B126,B127,B13,B130,B131,B132,B133,B134,B135,B136,B138,B139,B14,B15,B16,B17,B18,B19,B2,B20,B23,B24,B26,B27,B29,B30,B31,B32,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B53,B54,B57,B58,B59,B6,B61,B62,B63,B64,B65,B67,B68,B69,B7,B71,B73,B74,B75,B76,B78,B8,B80,B81,B82,B83,B84,B85,B86,B87,B89,B9,B90,B92,B93,B94,B95,B98,C1,C10,C12,C13,C14,C16,C17,C18,C19,C20,C21,C22,C23,C24,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C38,C39,C4,C40,C42,C43,C44,C45,C47,C48,C49,C50,C51,C53,C54,C55,C56,C57,C58,C6,C60,C62,C63,C64,C65,C66,C67,C68,C7,C70,C71,C72,C75,C76,C77,C78,C79,C8,C80,C84,C85,C86,C9,D1,D11,D2,D3,D6,D8,D9
`Chr1:61013135`	`C`	`CT`	1bp_insertion	frameshift_variant	192	A1,A10,A11,A13,A14,A15,A16,A18,A19,A2,A21,A22,A23,A24,A25,B1,B10,B100,B102,B103,B104,B106,B107,B108,B11,B110,B111,B112,B113,B114,B115,B117,B118,B120,B121,B123,B126,B127,B13,B130,B131,B132,B134,B135,B136,B138,B14,B15,B16,B17,B18,B19,B2,B20,B24,B26,B27,B29,B30,B31,B32,B34,B35,B36,B37,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B5,B50,B51,B52,B53,B54,B57,B58,B59,B6,B61,B62,B63,B64,B65,B67,B68,B69,B7,B71,B73,B74,B75,B76,B78,B8,B80,B81,B82,B83,B84,B85,B86,B87,B89,B9,B90,B92,B93,B94,B95,B98,C1,C10,C12,C13,C14,C16,C17,C18,C19,C20,C21,C22,C23,C24,C27,C28,C29,C3,C30,C31,C32,C33,C34,C36,C38,C39,C4,C40,C42,C43,C44,C45,C47,C48,C49,C50,C51,C53,C54,C55,C56,C57,C58,C6,C60,C62,C63,C64,C65,C67,C68,C7,C70,C71,C72,C75,C76,C77,C78,C79,C8,C80,C84,C85,C86,C9,D1,D11,D2,D3,D6,D8,D9
`Chr1:61013176`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,C11,C69,D7
`Chr1:61013957`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B112,C9
`Chr1:61015155`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B15,C77
`Chr1:61016616`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C1,C22,C51,C67
`Chr1:61016672`	`TG`	`T`	1bp_deletion	frameshift_variant	1	B43
`Chr1:61016672`	`TG`	`T`	1bp_deletion	CDS_variant	1	B43
`Chr1:61017770`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A2,B26,B77,C74
`Chr1:61018209`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783111.1

2037 aa

1018

2037

HSA

ResIII

SNF2-rel_dom

DEAD

Helicase_C

PF07529 HSA 26-93 aa PF04851 ResIII 502-663 aa PF00176 SNF2-rel_dom 507-792 aa PF00270 DEAD 524-664 aa PF00271 Helicase_C 1046-1158 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783111.1`	Pfam	`PF07529`	HSA	Family	26	93	1.6e-16	61.1	HSA domain
`XP_057783111.1`	Pfam	`PF04851`	ResIII	Family	502	663	9.8e-12	45.8	Type III restriction enzyme, res subunit
`XP_057783111.1`	Pfam	`PF00176`	SNF2-rel_dom	Domain	507	792	1.2e-89	301.0	SNF2-related domain
`XP_057783111.1`	Pfam	`PF00270`	DEAD	Domain	524	664	1.9e-08	35.0	DEAD/DEAH box helicase
`XP_057783111.1`	Pfam	`PF00271`	Helicase_C	Domain	1046	1158	2.2e-27	96.2	Helicase conserved C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927128.1
ATCATATTCATCACCGCAGTAATATAGTAAAGTCTCCATACACCCTCCTTCAAGTCGTTGCCTCTAATTTCATTTTTCCTCTTAAATTTCTCTTAATTCTATTTTTATTTTAAAACCCCCCCTCGAAAAACCAAATTTATTTATTTAAATATAATTAATTTTCACCGGATATATATTTACCCGCAGCTAGATCGATACATACACTCTCGTATACGTATTTTTTTTCCGGATCTGAGGCTCGTCGGAACCTGCCGGCGCTT...

CDS

1 records

下载 CDS FASTA

LOC131000974
ATGGCCTCGAAGGGTCCAAGGTCTAAACTTGACCATGAATCGCGGGCTAAGCGGCAGAAGGCCCTTGAAGCCCCAAAAGAACCTCAACGTCCTAAAACACATTGGGACCATGTCCTGGAAGAGATGGCCTGGTTGTCAAAGGACTTTGAGTCAGAGAGGAAATGGAAGCTGGCTCAGGCAAAGAAAGTTGCTATACGGGCCAGCAAGGGCATGCTTGATCAGGCCACAAGAGGGGAGAAGAGAGTAAAGGAAGAGGAGCA...

Protein

1 records

下载 Protein FASTA

XP_057783111.1
MASKGPRSKLDHESRAKRQKALEAPKEPQRPKTHWDHVLEEMAWLSKDFESERKWKLAQAKKVAIRASKGMLDQATRGEKRVKEEEQKLRKVALNISKDVKKFWIKIEKLVLYKHQLELDVKKKKALDKQLEFLLGQTERYSSMLAENLVNPPSLCKPSYLCNAEANPSTSERRGGESDNGSQSDIQAADEDYDLQSSEESEDDERTVDADEALITKEEREEELAALQSEIDLPLEEILKRYAAHEGSRGKSPEKDDDKP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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