Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001426`

染色体: Chr08 坐标: 11420298-11424504 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001426`
名称	SmilChr08G001426
描述	diaminopimelate decarboxylase 1, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11420298 - 11424504 / `+`

ID 对照

NCBI Gene ID	`LOC131000975`
GeneID	`131000975`
locus_tag	`-`
NCBI Name	`LOC131000975`
原始查询	`LOC131000975`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	diaminopimelate decarboxylase 1, chloroplastic-like
产物	diaminopimelate decarboxylase 1%2C chloroplastic-like
Arabidopsis	`AT3G14390` (AT3G14390) Pyridoxal-dependent decarboxylase family protein [Source:NCBI gene (formerly Entrezgene);Acc:820660] identity=79.4; qcov=1; evalue=0; confidence=high
Rice	`Os02g0440000` (LYSA) - identity=80.8; qcov=0.872; evalue=0; confidence=high
GO	GO:0008836 (diaminopimelate decarboxylase activity); GO:0009089 (GO:0009089); GO:0009507 (chloroplast)
KEGG	smil00300 (Lysine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00470 (D-Amino acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00278 (Orn_DAP_Arg_deC); PF01168 (Ala_racemase_N); PF02784 (Orn_Arg_deC_N)
InterPro	-
eggNOG	-
NR	GeneID:131000975

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057783108.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057783108.1`
3	Nucleus	细胞核	0.00000	`XP_057783108.1`
4	Chromosome	染色体	0.00000	`XP_057783108.1`
5	Centromere	着丝粒	0.00000	`XP_057783108.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11420493`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr8:11420555`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	B60
`Chr8:11420555`	`TCC`	`T`	2bp_deletion	CDS_variant	1	B60
`Chr8:11420690`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C65
`Chr8:11420776`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B19,B45,B9,C84
`Chr8:11421362`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr8:11422124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr8:11422161`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr8:11422564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B137
`Chr8:11423107`	`CT`	`C`	1bp_deletion	frameshift_variant	1	A2
`Chr8:11423107`	`CT`	`C`	1bp_deletion	CDS_variant	1	A2
`Chr8:11423156`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783108.1

483 aa

242

483

Orn_DAP_Arg_deC

Ala_racemase_N

Orn_Arg_deC_N

PF00278 Orn_DAP_Arg_deC 94-437 aa PF01168 Ala_racemase_N 100-300 aa PF02784 Orn_Arg_deC_N 100-346 aa

XP_057783109.1

483 aa

242

483

Orn_DAP_Arg_deC

Ala_racemase_N

Orn_Arg_deC_N

PF00278 Orn_DAP_Arg_deC 94-437 aa PF01168 Ala_racemase_N 100-300 aa PF02784 Orn_Arg_deC_N 100-346 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783108.1`	Pfam	`PF00278`	Orn_DAP_Arg_deC	Domain	94	437	2.5e-22	79.7	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
`XP_057783108.1`	Pfam	`PF01168`	Ala_racemase_N	Domain	100	300	2.8e-07	31.2	Alanine racemase, N-terminal domain
`XP_057783108.1`	Pfam	`PF02784`	Orn_Arg_deC_N	Domain	100	346	1.6e-49	169.3	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
`XP_057783109.1`	Pfam	`PF00278`	Orn_DAP_Arg_deC	Domain	94	437	2.5e-22	79.7	Pyridoxal-dependent decarboxylase, C-terminal sheet domain
`XP_057783109.1`	Pfam	`PF01168`	Ala_racemase_N	Domain	100	300	2.8e-07	31.2	Alanine racemase, N-terminal domain
`XP_057783109.1`	Pfam	`PF02784`	Orn_Arg_deC_N	Domain	100	346	1.6e-49	169.3	Pyridoxal-dependent decarboxylase, pyridoxal binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927125.1
AAATTCAAAAACTCTACATTTCAACTCTACAATAGAGGGAATTACCTCCACAGAGGAACCCTTGGAGATGCTCTAAGCCGCCACCTAAAAACCTAAAATTTGGTCGTTGAAACCATCTCTGTAGTAACGTGGACTCTCCACACTGTCACTCTCACCTGGCAACAATGGCGGCTTCGAACCTCCTCTCGCAGCCACCAACAGTTCCGCACAGGAAACACGTCAAGCTCTGTTCAAGCCCCTTCACCACAACCCTCATCTCC...

XM_057927126.1
AAAAACTCTACATTTCAACTCTACAATAGAGGGAATTACCTCCACAGAGGAACCCTTGGAGATGCTCTAAGCCGCCACCTAAAAACCTAAAATTTGGTCGTTGAAACCATCTCTGTAGTAACGTGGACTCTCCACACTGTCACTCTCACCTGGCAACAATGGCGGCTTCGAACCTCCTCTCGCAGCCACCAACAGTTCCGCACAGGAAACACGTCAAGCTCTGTTCAAGCCCCTTCACCACAACCCTCATCTCCCCCTTC...

CDS

2 records

下载 CDS FASTA

LOC131000975
ATGGCGGCTTCGAACCTCCTCTCGCAGCCACCAACAGTTCCGCACAGGAAACACGTCAAGCTCTGTTCAAGCCCCTTCACCACAACCCTCATCTCCCCCTTCAAATTCAAGCCCCTTTCAGCTTCTCTCAGAGCCCGCCCTCCGAGGGCAGTCCTCTCAACACCGGAGCCCCAAACCAAGAAATTGGAGCACTGTTTCGCGAAATCGGATGACGGATTCCTATATTGCGAGGGGGTTAAGGTCGAACAAGTGATGGAAGT...

Protein

2 records

下载 Protein FASTA

XP_057783108.1
MAASNLLSQPPTVPHRKHVKLCSSPFTTTLISPFKFKPLSASLRARPPRAVLSTPEPQTKKLEHCFAKSDDGFLYCEGVKVEQVMEVAEKRPFYLYSKPQIKRNVEAYKDALEGLNSIIGYAIKANNNLKILELLQSLGCGAVLVSGNELRLALQAGFDPTRCVFNGNGKILEDLVLAAQAGVFVNIDSEFDLENIVAAARISGTKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPKELKLVGA...

XP_057783109.1
MAASNLLSQPPTVPHRKHVKLCSSPFTTTLISPFKFKPLSASLRARPPRAVLSTPEPQTKKLEHCFAKSDDGFLYCEGVKVEQVMEVAEKRPFYLYSKPQIKRNVEAYKDALEGLNSIIGYAIKANNNLKILELLQSLGCGAVLVSGNELRLALQAGFDPTRCVFNGNGKILEDLVLAAQAGVFVNIDSEFDLENIVAAARISGTKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHPKELKLVGA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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