当前解析结果
SmilChr08G001444| 统一新 Gene ID | SmilChr08G001444 |
|---|---|
| 名称 | SmilChr08G001444 |
| 描述 | kinesin-like protein KIN-7D, mitochondrial |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 11587711 - 11597919 / - |
| NCBI Gene ID | LOC131000995 |
|---|---|
| GeneID | 131000995 |
| locus_tag | - |
| NCBI Name | LOC131000995 |
| 原始查询 | LOC131000995 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-7D, mitochondrial |
| 产物 | kinesin-like protein KIN-7D%2C mitochondrial |
| Arabidopsis | AT4G39050 (AT4G39050)Kinesin motor family protein [Source:NCBI gene (formerly Entrezgene);Acc:830060] identity=69.5; qcov=0.986; evalue=0; confidence=high |
| Rice | Os10g0512800 (OsRFPHC-10)- identity=66.4; qcov=0.925; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0008017 (microtubule binding) |
| KEGG | smil04814 (Motor proteins - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00225 (Kinesin); PF13920 (zf-C3HC4_3); PF16796 (Microtub_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131000995 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057783131.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057783131.1 |
| 3 | Phragmoplast | Phragmoplast | 0.20000 | XP_057783131.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057783131.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057783131.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:11588247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B131,B77,C19 |
Chr8:11588626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B139,B2 |
Chr8:11588798 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B77,C19 |
Chr8:11589113 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C31,D11 |
Chr8:11590145 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B59,D1,D3 |
Chr8:11590782 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B123 |
Chr8:11593148 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B123,B34 |
Chr8:11593559 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B139,B2,B22,B56,B96 |
Chr8:11594479 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:11594508 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B28 |
Chr8:11594727 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr8:11595488 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B11,B14,B18,B19,B3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783131.1PF00225
Kinesin 108-419 aa
PF16796
Microtub_bd 126-239 aa
PF13920
zf-C3HC4_3 1040-1082 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783131.1 |
Pfam | PF00225 |
Kinesin | Domain | 108 | 419 | 5.2e-106 | 355.0 | Kinesin motor domain |
XP_057783131.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 126 | 239 | 4.6e-20 | 72.8 | Microtubule binding |
XP_057783131.1 |
Pfam | PF13920 |
zf-C3HC4_3 | Domain | 1040 | 1082 | 3.1e-11 | 43.6 | Zinc finger, C3HC4 type (RING finger) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。