Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001454`

染色体: Chr08 坐标: 11703381-11715823 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001454`
名称	SmilChr08G001454
描述	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11703381 - 11715823 / `+`

ID 对照

NCBI Gene ID	`LOC131001002`
GeneID	`131001002`
locus_tag	`-`
NCBI Name	`LOC131001002`
原始查询	`LOC131001002`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like
产物	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9-like
Arabidopsis	`AT4G34700` (CIB22) LYR family of Fe/S cluster biosis protein [Source:NCBI gene (formerly Entrezgene);Acc:829622] identity=76.3; qcov=0.991; evalue=2.66e-64; confidence=high
Rice	`Os06g0714100` - identity=69.6; qcov=0.974; evalue=8.06e-57; confidence=high
GO	GO:0005747 (GO:0005747); GO:0006120 (mitochondrial electron transport, NADH to ubiquinone)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF05347 (Complex1_LYR)
InterPro	-
eggNOG	-
NR	GeneID:131001002

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057783144.1`
2	Mitochondrion inner membrane	线粒体内膜	0.60000	`XP_057783147.1`
3	Mitochondrion membrane	线粒体膜	0.40000	`XP_057783147.1`
4	Nucleus	细胞核	0.00000	`XP_057783144.1`
5	Chromosome	染色体	0.00000	`XP_057783144.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11703730`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B15,C15,C46
`Chr8:11705449`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C84
`Chr8:11705449`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr8:11711547`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B111
`Chr8:11711547`	`G`	`GA`	1bp_insertion	CDS_variant	1	B111
`Chr8:11711561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:11714031`	`G`	`A`	EMS_canonical_SNV	stop_gained	14	A19,B109,B117,B13,B136,B23,B68,B81,B87,C18,C49,C74,C80,C85
`Chr8:11714033`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr8:11714083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C61
`Chr8:11714110`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,C50,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783144.1

130 aa

130

Complex1_LYR

PF05347 Complex1_LYR 18-71 aa

XP_057783145.1

130 aa

130

Complex1_LYR

PF05347 Complex1_LYR 18-71 aa

XP_057783146.1

116 aa

116

Complex1_LYR

PF05347 Complex1_LYR 18-71 aa

XP_057783147.1

115 aa

115

Complex1_LYR

PF05347 Complex1_LYR 18-71 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783144.1`	Pfam	`PF05347`	Complex1_LYR	Family	18	71	1.3e-05	25.8	Complex 1 protein (LYR family)
`XP_057783145.1`	Pfam	`PF05347`	Complex1_LYR	Family	18	71	1.3e-05	25.8	Complex 1 protein (LYR family)
`XP_057783146.1`	Pfam	`PF05347`	Complex1_LYR	Family	18	71	7.6e-06	26.5	Complex 1 protein (LYR family)
`XP_057783147.1`	Pfam	`PF05347`	Complex1_LYR	Family	18	71	1e-05	26.1	Complex 1 protein (LYR family)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057927164.1
TAACTATTATTCTTTTATTCCACTCACAGCATATTTATCAATTTTCTTAATCTCCGTCTCTAACATGAAGTGAGAGTTTATTTTGTGGATAGAGACGGAGTTTAATTTATTAATCACAACATTGCAAGAATGAATACCAAACGCACCCTTTTAACTATTTTACGACTGGAGATATTCAACGACGTCGTACAGGCAACATAAGTTTGAAATGAAAGAAGCAAGAAATTTGTTATGAGACGGTAGCGAAGACTGGAGTGAAG...

XM_057927163.1
TAACTATTATTCTTTTATTCCACTCACAGCATATTTATCAATTTTCTTAATCTCCGTCTCTAACATGAAGTGAGAGTTTATTTTGTGGATAGAGACGGAGTTTAATTTATTAATCACAACATTGCAAGAATGAATACCAAACGCACCCTTTTAACTATTTTACGACTGGAGATATTCAACGACGTCGTACAGGCAACATAAGTTTGAAATGAAAGAAGCAAGAAATTTGTTATGAGACGGTAGCGAAGACTGGAGTGAAG...

CDS

4 records

下载 CDS FASTA

LOC131001002
ATGAGCGTGACGACGGCGTCGTATGTAGCTCGTCGAGCAGCGCAGAAGGAGAGGGTAAGGATCCTCTACAGGCGAGCACTCAAGGATACTCTTAATTGGGCCGTACATCGCCACCTCTTTTACCACGATGCTGATGCTCTCAGAGAGAAGTTTGAGGCCAACAGACAAGTGGAGGATATTGAACTCATTGATAAAATGATAGCTGCTGGTGAAGCAAGCCACGACAAGTGGCGTCACCCTGATCCTTACATTGTTCCATG...

Protein

4 records

下载 Protein FASTA

XP_057783144.1
MSVTTASYVARRAAQKERVRILYRRALKDTLNWAVHRHLFYHDADALREKFEANRQVEDIELIDKMIAAGEASHDKWRHPDPYIVRRSSPDCGATSNETKSFYLWGRYAKPKSTTGAIIFLREEIHLDST

XP_057783145.1
MSVTTASYVARRAAQKERVRILYRRALKDTLNWAVHRHLFYHDADALREKFEANRQVEDIELIDKMIAAGEASHDKWRHPDPYIVRRSSPDCGATSNETKSFYLWGRYAKPKSTTGAIIFLREEIHLDST

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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