Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001469`

染色体: Chr08 坐标: 11832845-11838794 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001469`
名称	SmilChr08G001469
描述	putative pentatricopeptide repeat-containing protein At1g74400
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11832845 - 11838794 / `+`

ID 对照

NCBI Gene ID	`LOC131001016`
GeneID	`131001016`
locus_tag	`-`
NCBI Name	`LOC131001016`
原始查询	`LOC131001016`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative pentatricopeptide repeat-containing protein At1g74400
产物	putative pentatricopeptide repeat-containing protein At1g74400
Arabidopsis	`AT3G23330` (AT3G23330) Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:821914] identity=34.4; qcov=0.841; evalue=1.69e-78; confidence=low
Rice	`Os02g0126500` - identity=47.1; qcov=0.752; evalue=2.98e-112; confidence=high
GO	GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG	-
Pfam	PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif)
InterPro	-
eggNOG	-
NR	GeneID:131001016

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057783160.1`
2	Nucleus	细胞核	0.00000	`XP_057783160.1`
3	Chromosome	染色体	0.00000	`XP_057783160.1`
4	Centromere	着丝粒	0.00000	`XP_057783160.1`
5	Chromatin	染色质	0.00000	`XP_057783160.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11832899`	`G`	`A`	EMS_canonical_SNV	stop_gained	5	B136,B29,B45,B62,B77
`Chr8:11832899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B136,B29,B45,B62,B77
`Chr8:11832906`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B19,B30,B78,C28,C64
`Chr8:11832915`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B104
`Chr8:11832915`	`AC`	`A`	1bp_deletion	CDS_variant	1	B104
`Chr8:11832927`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B108,B53,B71,D8
`Chr8:11833040`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B73,D3
`Chr8:11833069`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B128,B47,C64,C66
`Chr8:11833125`	`TCA`	`T`	2bp_deletion	frameshift_variant	3	B38,B39,C72
`Chr8:11833125`	`TCA`	`T`	2bp_deletion	CDS_variant	3	B38,B39,C72
`Chr8:11833207`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B125,C12,C21,C36
`Chr8:11833570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B128,B47,C64,C66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783160.1

491 aa

246

491

PPR

PPR_2

PPR_3

PPR

PPR_3

PPR

E_motif

PPR

PF01535 PPR 203-228 aa PF13041 PPR_2 308-356 aa PF13812 PPR_3 309-355 aa PF01535 PPR 311-341 aa PF13812 PPR_3 331-373 aa PF01535 PPR 346-373 aa PF01535 PPR 383-406 aa PF20431 E_motif 430-483 aa PF01535 PPR 452-480 aa

XP_057783161.1

491 aa

246

491

PPR

PPR_2

PPR_3

PPR

PPR_3

PPR

E_motif

PPR

XP_057783162.1

491 aa

246

491

PPR

PPR_2

PPR_3

PPR

PPR_3

PPR

E_motif

PPR

XP_057783163.1

491 aa

246

491

PPR

PPR_2

PPR_3

PPR

PPR_3

PPR

E_motif

PPR

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783160.1`	Pfam	`PF01535`	PPR	Repeat	203	228	1.9e-30	103.6	PPR repeat
`XP_057783160.1`	Pfam	`PF13041`	PPR_2	Repeat	308	356	6.5e-30	103.7	PPR repeat family
`XP_057783160.1`	Pfam	`PF13812`	PPR_3	Repeat	309	355	1.9e-07	31.8	Pentatricopeptide repeat domain
`XP_057783160.1`	Pfam	`PF01535`	PPR	Repeat	311	341	1.9e-30	103.6	PPR repeat
`XP_057783160.1`	Pfam	`PF13812`	PPR_3	Repeat	331	373	1.9e-07	31.8	Pentatricopeptide repeat domain
`XP_057783160.1`	Pfam	`PF01535`	PPR	Repeat	346	373	1.9e-30	103.6	PPR repeat
`XP_057783160.1`	Pfam	`PF01535`	PPR	Repeat	383	406	1.9e-30	103.6	PPR repeat
`XP_057783160.1`	Pfam	`PF20431`	E_motif	Repeat	430	483	2.1e-16	60.6	E motif
`XP_057783160.1`	Pfam	`PF01535`	PPR	Repeat	452	480	1.9e-30	103.6	PPR repeat
`XP_057783161.1`	Pfam	`PF01535`	PPR	Repeat	203	228	1.9e-30	103.6	PPR repeat
`XP_057783161.1`	Pfam	`PF13041`	PPR_2	Repeat	308	356	6.5e-30	103.7	PPR repeat family
`XP_057783161.1`	Pfam	`PF13812`	PPR_3	Repeat	309	355	1.9e-07	31.8	Pentatricopeptide repeat domain
`XP_057783161.1`	Pfam	`PF01535`	PPR	Repeat	311	341	1.9e-30	103.6	PPR repeat
`XP_057783161.1`	Pfam	`PF13812`	PPR_3	Repeat	331	373	1.9e-07	31.8	Pentatricopeptide repeat domain
`XP_057783161.1`	Pfam	`PF01535`	PPR	Repeat	346	373	1.9e-30	103.6	PPR repeat
`XP_057783161.1`	Pfam	`PF01535`	PPR	Repeat	383	406	1.9e-30	103.6	PPR repeat
`XP_057783161.1`	Pfam	`PF20431`	E_motif	Repeat	430	483	2.1e-16	60.6	E motif
`XP_057783161.1`	Pfam	`PF01535`	PPR	Repeat	452	480	1.9e-30	103.6	PPR repeat
`XP_057783162.1`	Pfam	`PF01535`	PPR	Repeat	203	228	1.9e-30	103.6	PPR repeat
`XP_057783162.1`	Pfam	`PF13041`	PPR_2	Repeat	308	356	6.5e-30	103.7	PPR repeat family
`XP_057783162.1`	Pfam	`PF13812`	PPR_3	Repeat	309	355	1.9e-07	31.8	Pentatricopeptide repeat domain
`XP_057783162.1`	Pfam	`PF01535`	PPR	Repeat	311	341	1.9e-30	103.6	PPR repeat
`XP_057783162.1`	Pfam	`PF13812`	PPR_3	Repeat	331	373	1.9e-07	31.8	Pentatricopeptide repeat domain
`XP_057783162.1`	Pfam	`PF01535`	PPR	Repeat	346	373	1.9e-30	103.6	PPR repeat
`XP_057783162.1`	Pfam	`PF01535`	PPR	Repeat	383	406	1.9e-30	103.6	PPR repeat
`XP_057783162.1`	Pfam	`PF20431`	E_motif	Repeat	430	483	2.1e-16	60.6	E motif
`XP_057783162.1`	Pfam	`PF01535`	PPR	Repeat	452	480	1.9e-30	103.6	PPR repeat
`XP_057783163.1`	Pfam	`PF01535`	PPR	Repeat	203	228	1.9e-30	103.6	PPR repeat
`XP_057783163.1`	Pfam	`PF13041`	PPR_2	Repeat	308	356	6.5e-30	103.7	PPR repeat family
`XP_057783163.1`	Pfam	`PF13812`	PPR_3	Repeat	309	355	1.9e-07	31.8	Pentatricopeptide repeat domain
`XP_057783163.1`	Pfam	`PF01535`	PPR	Repeat	311	341	1.9e-30	103.6	PPR repeat
`XP_057783163.1`	Pfam	`PF13812`	PPR_3	Repeat	331	373	1.9e-07	31.8	Pentatricopeptide repeat domain
`XP_057783163.1`	Pfam	`PF01535`	PPR	Repeat	346	373	1.9e-30	103.6	PPR repeat
`XP_057783163.1`	Pfam	`PF01535`	PPR	Repeat	383	406	1.9e-30	103.6	PPR repeat
`XP_057783163.1`	Pfam	`PF20431`	E_motif	Repeat	430	483	2.1e-16	60.6	E motif
`XP_057783163.1`	Pfam	`PF01535`	PPR	Repeat	452	480	1.9e-30	103.6	PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057927177.1
CATTTGTGCTATTAATATGATAATATTGGGAAGAACTTAAACCAAACAAATGTGGGAAGAACTCAGAAACACCAAGATAAACCTCTTCGGAATCGAACATATGCTCACTCAAATCAAGATTCAAGGTGCTCAAAATTTCAAAACAATCTCCCAATTCCTGCATCACTGTTCTCAAACAAAGAATCTCAGAATAGTCCAAGAATTCTACGCGCATGTAATTAGAGCAGAGTTATTCTTCATTTCCCCTAATCTTCAAACTG...

XM_057927178.1
TATTAATATGATAATATTGGGAAGAACTTAAACCAAACAAATGTGGGAAGAACTCAGAAACACCAAGATAAACCTCTTCGGAATCGAACATATGCTCACTCAAATCAAGATTCAAGGTGCTCAAAATTTCAAAACAATCTCCCAATTCCTGCATCACTGTTCTCAAACAAAGAATCTCAGAATAGTCCAAGAATTCTACGCGCATGTAATTAGAGCAGAGTTATTCTTCATTTCCCCTAATCTTCAAACTGACCTAGTTC...

CDS

4 records

下载 CDS FASTA

LOC131001016
ATGTGGGAAGAACTCAGAAACACCAAGATAAACCTCTTCGGAATCGAACATATGCTCACTCAAATCAAGATTCAAGGTGCTCAAAATTTCAAAACAATCTCCCAATTCCTGCATCACTGTTCTCAAACAAAGAATCTCAGAATAGTCCAAGAATTCTACGCGCATGTAATTAGAGCAGAGTTATTCTTCATTTCCCCTAATCTTCAAACTGACCTAGTTCTGACTTACACATCATGCATCGGCAAGAACAACCATAAGAT...

Protein

4 records

下载 Protein FASTA

XP_057783160.1
MWEELRNTKINLFGIEHMLTQIKIQGAQNFKTISQFLHHCSQTKNLRIVQEFYAHVIRAELFFISPNLQTDLVLTYTSCIGKNNHKILTHLLKSLNLRNPLPFNSIVSHFSQHGSDCYALHTFSFMHRNSVYVDSYALCTSLKSASCLKKDVFGKLMHAYVEKSGWFASVFVGSALVDFYAKLWSMSDAAMVFDEIPEKNTVCANALLSGYAEAKMWGEGIELVRRMHLLRLETDNFTLSAALRACSGLCAVELGKEVHA...

XP_057783161.1
MWEELRNTKINLFGIEHMLTQIKIQGAQNFKTISQFLHHCSQTKNLRIVQEFYAHVIRAELFFISPNLQTDLVLTYTSCIGKNNHKILTHLLKSLNLRNPLPFNSIVSHFSQHGSDCYALHTFSFMHRNSVYVDSYALCTSLKSASCLKKDVFGKLMHAYVEKSGWFASVFVGSALVDFYAKLWSMSDAAMVFDEIPEKNTVCANALLSGYAEAKMWGEGIELVRRMHLLRLETDNFTLSAALRACSGLCAVELGKEVHA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器