Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001473`

染色体: Chr08 坐标: 11899149-11901107 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001473`
名称	SmilChr08G001473
描述	amidophosphoribosyltransferase, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	11899149 - 11901107 / `+`

ID 对照

NCBI Gene ID	`LOC131001022`
GeneID	`131001022`
locus_tag	`-`
NCBI Name	`LOC131001022`
原始查询	`LOC131001022`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	amidophosphoribosyltransferase, chloroplastic-like
产物	amidophosphoribosyltransferase%2C chloroplastic-like
Arabidopsis	`AT4G34740` (ASE2) GLN phosphoribosyl pyrophosphate amidotransferase 2 [Source:NCBI gene (formerly Entrezgene);Acc:829626] identity=86.3; qcov=0.852; evalue=0; confidence=high
Rice	`Os05g0430800` - identity=67.5; qcov=0.813; evalue=0; confidence=high
GO	GO:0004044 (amidophosphoribosyltransferase activity); GO:0005737 (cytoplasm); GO:0006164 (purine nucleotide biosynthetic process); GO:0009113 (purine nucleobase biosynthetic process)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00250 (Alanine, aspartate and glutamate metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00156 (Pribosyltran); PF13230 (GATase_4); PF13522 (GATase_6); PF13537 (GATase_7)
InterPro	-
eggNOG	-
NR	GeneID:131001022

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057783170.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057783170.1`
3	Nucleus	细胞核	0.00000	`XP_057783170.1`
4	Chromosome	染色体	0.00000	`XP_057783170.1`
5	Centromere	着丝粒	0.00000	`XP_057783170.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:11899440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B2,B24,C8
`Chr8:11899484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B105
`Chr8:11899601`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B37,C42
`Chr8:11899737`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr8:11899792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B102,B129,B91,B98
`Chr8:11899809`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr8:11899819`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr8:11899906`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B115
`Chr8:11899928`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr8:11900071`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr8:11900268`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr8:11900277`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B135,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783170.1

567 aa

284

567

GATase_4

GATase_6

GATase_7

Pribosyltran

PF13230 GATase_4 144-193 aa PF13522 GATase_6 145-322 aa PF13537 GATase_7 161-278 aa PF00156 Pribosyltran 339-450 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783170.1`	Pfam	`PF13230`	GATase_4	Domain	144	193	1.3e-05	25.0	Glutamine amidotransferases class-II
`XP_057783170.1`	Pfam	`PF13522`	GATase_6	Domain	145	322	6.5e-24	85.2	Glutamine amidotransferase domain
`XP_057783170.1`	Pfam	`PF13537`	GATase_7	Domain	161	278	1.1e-23	84.3	Glutamine amidotransferase domain
`XP_057783170.1`	Pfam	`PF00156`	Pribosyltran	Domain	339	450	1.1e-08	35.3	Phosphoribosyl transferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927187.1
TCACTAGGGTCACCGGTTGCATACCCTAACATTCCTCCATCCTTCTCTCCAGTCTCGCTCATCACAACACAATATCTAAGGCAAAACCTAGCAACACACTTCGGCTATTCATAGTCCATTTCTCCCTAAACCCTCCATGGCCGCCTCCACCGCCTCAACCGCCGCCACCTCCTATCGTGCCACCTCCTCCACCCGCCTCAACGCTCTCATCCCGCCGTCCACCACCTCATTCACCCTCCCTTCCATAACCCCCCAAAAAT...

CDS

1 records

下载 CDS FASTA

LOC131001022
ATGGCCGCCTCCACCGCCTCAACCGCCGCCACCTCCTATCGTGCCACCTCCTCCACCCGCCTCAACGCTCTCATCCCGCCGTCCACCACCTCATTCACCCTCCCTTCCATAACCCCCCAAAAATCCCTCCACGTCACCCTCTCCAAAAACCCTATCTCAGAAATCATCTCCAGTTACAAAACCTCCTCAGATTCGGATTCGAGCATCCCCTTCGACGGCGACGACAAGCCCCGCGAAGAATGCGGCGTCGTCGGAATATA...

Protein

1 records

下载 Protein FASTA

XP_057783170.1
MAASTASTAATSYRATSSTRLNALIPPSTTSFTLPSITPQKSLHVTLSKNPISEIISSYKTSSDSDSSIPFDGDDKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVSVHDNVLHSVTGVGLVSEVFNESKLDKLPGDMAIGHVRYSTAGASMLKNVQPFVAGYRFGSVGVAHNGNLVNYQALREELEENGSIFNTSSDTEVVLHLIAISKARPFFLRIVEACEKLEGAYSMVFLTEDKLVAVRDPFGFRPLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器