当前解析结果
SmilChr08G001522| 统一新 Gene ID | SmilChr08G001522 |
|---|---|
| 名称 | SmilChr08G001522 |
| 描述 | serine/threonine-protein kinase WNK1-like |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 12381706 - 12384727 / + |
| NCBI Gene ID | LOC131001067 |
|---|---|
| GeneID | 131001067 |
| locus_tag | - |
| NCBI Name | LOC131001067 |
| 原始查询 | LOC131001067 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | serine/threonine-protein kinase WNK1-like |
| 产物 | serine/threonine-protein kinase WNK1-like |
| Arabidopsis | AT3G04910 (WNK1)with no lysine (K) kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:819651] identity=64; qcov=1.1; evalue=0; confidence=high |
| Rice | Os07g0572800 (OsWNK1)- identity=68.5; qcov=0.973; evalue=0; confidence=high |
| GO | GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0005737 (cytoplasm); GO:0006468 (protein phosphorylation); GO:0035556 (intracellular signal transduction) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12202 (OSR1_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001067 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057783232.1 |
| 2 | Nucleus | 细胞核 | 1.00000 | XP_057783235.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057783236.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783232.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783232.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:12382628 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr8:12382895 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B50,B89,C74,D3 |
Chr8:12382948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B119,B64,C10,C38 |
Chr8:12383413 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A16,A22,C25,C47,D7 |
Chr8:12383487 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C58 |
Chr8:12383488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B25,C82 |
Chr8:12383613 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:12383636 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B22 |
Chr8:12383694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B47,B66,B8 |
Chr8:12383783 |
ATG |
A |
2bp_deletion | frameshift_variant | 67 | A1,A14,A2,A21,A24,A25,A3,A5,A9,B10,B109,B122,B123,B126,B127,B129,B131,B138,B15,B16,B2,B21,B24,B28,B33,B34,B54,B55,B59,B60,B63,B7,B79,B80,B83,B85,B89,B93,B94,B97,C12,C13,C15,C16,C2,C20,C22,C23,C29,C34,C4,C43,C44,C48,C49,C5,C58,C6,C60,C61,C62,C65,C8,C83,D10,D5,D7 |
Chr8:12383791 |
C |
CT |
1bp_insertion | frameshift_variant | 67 | A1,A14,A2,A21,A24,A25,A3,A5,A9,B10,B109,B122,B123,B126,B127,B129,B131,B138,B15,B16,B2,B21,B24,B28,B33,B34,B54,B55,B59,B60,B63,B7,B79,B80,B83,B85,B89,B93,B94,B97,C12,C13,C15,C16,C2,C20,C22,C23,C29,C34,C4,C43,C44,C48,C49,C5,C58,C6,C60,C61,C62,C65,C8,C83,D10,D5,D7 |
Chr8:12383795 |
AG |
A |
1bp_deletion | frameshift_variant | 67 | A1,A14,A2,A21,A24,A25,A3,A5,A9,B10,B109,B122,B123,B126,B127,B129,B131,B138,B15,B16,B2,B21,B24,B28,B33,B34,B54,B55,B59,B60,B63,B7,B79,B80,B83,B85,B89,B93,B94,B97,C12,C13,C15,C16,C2,C20,C22,C23,C29,C34,C4,C43,C44,C48,C49,C5,C58,C6,C60,C61,C62,C65,C8,C83,D10,D5,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783232.1PF07714
PK_Tyr_Ser-Thr 27-265 aa
PF00069
Pkinase 27-281 aa
XP_057783233.1PF00069
Pkinase 5-246 aa
PF07714
PK_Tyr_Ser-Thr 20-230 aa
XP_057783235.1PF07714
PK_Tyr_Ser-Thr 27-265 aa
PF00069
Pkinase 27-281 aa
PF12202
OSR1_C 375-430 aa
XP_057783236.1PF00069
Pkinase 5-246 aa
PF07714
PK_Tyr_Ser-Thr 20-230 aa
PF12202
OSR1_C 340-395 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783232.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 27 | 265 | 3.6e-32 | 112.4 | Protein tyrosine and serine/threonine kinase |
XP_057783232.1 |
Pfam | PF00069 |
Pkinase | Domain | 27 | 281 | 3.9e-49 | 168.1 | Protein kinase domain |
XP_057783233.1 |
Pfam | PF00069 |
Pkinase | Domain | 5 | 246 | 6.5e-45 | 154.3 | Protein kinase domain |
XP_057783233.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 20 | 230 | 1.6e-30 | 107.0 | Protein tyrosine and serine/threonine kinase |
XP_057783235.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 27 | 265 | 3.1e-32 | 112.6 | Protein tyrosine and serine/threonine kinase |
XP_057783235.1 |
Pfam | PF00069 |
Pkinase | Domain | 27 | 281 | 3.3e-49 | 168.4 | Protein kinase domain |
XP_057783235.1 |
Pfam | PF12202 |
OSR1_C | Domain | 375 | 430 | 5.8e-06 | 27.0 | Oxidative-stress-responsive kinase 1 C-terminal domain |
XP_057783236.1 |
Pfam | PF00069 |
Pkinase | Domain | 5 | 246 | 5.6e-45 | 154.5 | Protein kinase domain |
XP_057783236.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 20 | 230 | 1.3e-30 | 107.2 | Protein tyrosine and serine/threonine kinase |
XP_057783236.1 |
Pfam | PF12202 |
OSR1_C | Domain | 340 | 395 | 5.2e-06 | 27.2 | Oxidative-stress-responsive kinase 1 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
4 records
下载 cDNA FASTA4 records
下载 CDS FASTA4 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。