当前解析结果
SmilChr08G001552| 统一新 Gene ID | SmilChr08G001552 |
|---|---|
| 名称 | SmilChr08G001552 |
| 描述 | uncharacterized SmilChr08G001552 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 12727908 - 12731693 / + |
| NCBI Gene ID | LOC131001094 |
|---|---|
| GeneID | 131001094 |
| locus_tag | - |
| NCBI Name | LOC131001094 |
| 原始查询 | LOC131001094 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827097]; symbol=AT4G14500; hit=AT4G14500; species=arabidopsis; confidence=high |
| 产物 | Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827097]; symbol=AT4G14500; hit=AT4G14500; species=arabidopsis; confidence=high |
| Arabidopsis | AT4G14500 (AT4G14500)Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827097] identity=60.6; qcov=0.968; evalue=0; confidence=high |
| Rice | Os07g0185200- identity=63; qcov=0.67; evalue=3.77e-141; confidence=high |
| GO | GO:0008289 (lipid binding) |
| KEGG | - |
| Pfam | PF01852 (START) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001094 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 0.60000 | XP_057783287.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 0.40000 | XP_057783288.1 |
| 3 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057783287.1 |
| 4 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057783287.1 |
| 5 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057783287.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:12728318 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr8:12728362 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B105,B118,B134,C79 |
Chr8:12729796 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C20 |
Chr8:12731096 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B82,C48 |
Chr8:12731108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,B121,B21,B79,C54 |
Chr8:12731366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,C21,C36 |
Chr8:12731384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr8:12731431 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A23,B115,C50,C69 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783287.1PF01852
START 168-334 aa
XP_057783288.1PF01852
START 167-333 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783287.1 |
Pfam | PF01852 |
START | Domain | 168 | 334 | 2.6e-05 | 24.4 | START domain |
XP_057783288.1 |
Pfam | PF01852 |
START | Domain | 167 | 333 | 2.6e-05 | 24.4 | START domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。