Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001572`

染色体: Chr08 坐标: 12938402-12939855 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001572`
名称	SmilChr08G001572
描述	calmodulin-like protein 11
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	12938402 - 12939855 / `+`

ID 对照

NCBI Gene ID	`LOC131001116`
GeneID	`131001116`
locus_tag	`-`
NCBI Name	`LOC131001116`
原始查询	`LOC131001116`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calmodulin-like protein 11
产物	calmodulin-like protein 11
Arabidopsis	`AT3G22930` (CML11) calmodulin-like 11 [Source:NCBI gene (formerly Entrezgene);Acc:821865] identity=83.6; qcov=0.973; evalue=5.68e-86; confidence=high
Rice	`Os05g0491100` (CALa*) - identity=79; qcov=0.987; evalue=2.32e-83; confidence=high
GO	GO:0005509 (calcium ion binding); GO:0030234 (enzyme regulator activity)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00036 (EF-hand_1); PF13202 (EF-hand_5); PF13405 (EF-hand_6); PF13499 (EF-hand_7); PF13833 (EF-hand_8)
InterPro	-
eggNOG	-
NR	GeneID:131001116

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057783343.1`
2	Cytosol	细胞质基质	0.60000	`XP_057783343.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057783345.1`
4	Nucleus	细胞核	0.00000	`XP_057783343.1`
5	Chromosome	染色体	0.00000	`XP_057783343.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:12938895`	`C`	`CT`	1bp_insertion	frameshift_variant	104	A11,A15,A2,A21,A22,A3,A5,A6,A9,B10,B104,B105,B11,B110,B111,B112,B118,B12,B121,B125,B127,B128,B129,B132,B135,B138,B2,B21,B24,B26,B28,B29,B31,B32,B33,B38,B39,B4,B44,B46,B47,B50,B53,B55,B57,B58,B59,B63,B65,B66,B69,B70,B74,B78,B79,B8,B80,B82,B86,B89,B90,B91,B94,C1,C11,C12,C14,C15,C16,C17,C21,C24,C26,C30,C31,C32,C34,C36,C38,C39,C46,C48,C52,C54,C55,C56,C59,C62,C63,C64,C65,C66,C68,C69,C72,C76,C82,C86,C9,D1,D2,D7,D8,D9
`Chr8:12938921`	`CTG`	`C`	2bp_deletion	frameshift_variant	65	A1,A14,A19,A24,A25,A8,B103,B104,B109,B117,B122,B123,B126,B136,B16,B2,B21,B22,B23,B26,B34,B35,B46,B51,B53,B54,B55,B58,B59,B61,B64,B7,B81,B87,B90,B92,B94,B98,C10,C13,C18,C2,C22,C23,C29,C34,C38,C4,C41,C43,C44,C45,C46,C5,C58,C63,C68,C69,C71,C77,C8,D10,D11,D2,D5

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783343.1

180 aa

180

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF00036 EF-hand_1 12-40 aa PF13405 EF-hand_6 12-40 aa PF13499 EF-hand_7 12-73 aa PF13202 EF-hand_5 13-36 aa PF13833 EF-hand_8 25-74 aa PF00036 EF-hand_1 48-74 aa PF13202 EF-hand_5 50-73 aa PF13833 EF-hand_8 113-137 aa PF13499 EF-hand_7 113-177 aa PF00036 EF-hand_1 115-142 aa PF13405 EF-hand_6 115-144 aa PF13202 EF-hand_5 116-140 aa PF13833 EF-hand_8 131-176 aa PF00036 EF-hand_1 151-178 aa PF13202 EF-hand_5 154-176 aa

XP_057783345.1

150 aa

150

EF-hand_8

EF-hand_1

EF-hand_6

EF-hand_7

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

EF-hand_8

EF-hand_7

EF-hand_1

EF-hand_6

EF-hand_5

EF-hand_8

EF-hand_1

EF-hand_5

PF13833 EF-hand_8 12-33 aa PF00036 EF-hand_1 12-40 aa PF13405 EF-hand_6 12-40 aa PF13499 EF-hand_7 12-73 aa PF13202 EF-hand_5 13-36 aa PF13833 EF-hand_8 25-74 aa PF00036 EF-hand_1 48-74 aa PF13202 EF-hand_5 50-73 aa PF13833 EF-hand_8 83-107 aa PF13499 EF-hand_7 83-147 aa PF00036 EF-hand_1 85-112 aa PF13405 EF-hand_6 85-114 aa PF13202 EF-hand_5 86-110 aa PF13833 EF-hand_8 105-146 aa PF00036 EF-hand_1 121-148 aa PF13202 EF-hand_5 124-146 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783343.1`	Pfam	`PF00036`	EF-hand_1	Domain	12	40	1.3e-39	131.5	EF hand domain
`XP_057783343.1`	Pfam	`PF13405`	EF-hand_6	Domain	12	40	1.1e-30	103.1	EF-hand domain
`XP_057783343.1`	Pfam	`PF13499`	EF-hand_7	Domain	12	73	2.4e-40	137.4	EF-hand domain pair
`XP_057783343.1`	Pfam	`PF13202`	EF-hand_5	Domain	13	36	5.5e-26	89.5	EF hand
`XP_057783343.1`	Pfam	`PF13833`	EF-hand_8	Domain	25	74	1.3e-25	89.6	EF-hand domain pair
`XP_057783343.1`	Pfam	`PF00036`	EF-hand_1	Domain	48	74	1.3e-39	131.5	EF hand domain
`XP_057783343.1`	Pfam	`PF13202`	EF-hand_5	Domain	50	73	5.5e-26	89.5	EF hand
`XP_057783343.1`	Pfam	`PF13833`	EF-hand_8	Domain	113	137	1.3e-25	89.6	EF-hand domain pair
`XP_057783343.1`	Pfam	`PF13499`	EF-hand_7	Domain	113	177	2.4e-40	137.4	EF-hand domain pair
`XP_057783343.1`	Pfam	`PF00036`	EF-hand_1	Domain	115	142	1.3e-39	131.5	EF hand domain
`XP_057783343.1`	Pfam	`PF13405`	EF-hand_6	Domain	115	144	1.1e-30	103.1	EF-hand domain
`XP_057783343.1`	Pfam	`PF13202`	EF-hand_5	Domain	116	140	5.5e-26	89.5	EF hand
`XP_057783343.1`	Pfam	`PF13833`	EF-hand_8	Domain	131	176	1.3e-25	89.6	EF-hand domain pair
`XP_057783343.1`	Pfam	`PF00036`	EF-hand_1	Domain	151	178	1.3e-39	131.5	EF hand domain
`XP_057783343.1`	Pfam	`PF13202`	EF-hand_5	Domain	154	176	5.5e-26	89.5	EF hand
`XP_057783345.1`	Pfam	`PF13833`	EF-hand_8	Domain	12	33	4.4e-26	91.1	EF-hand domain pair
`XP_057783345.1`	Pfam	`PF00036`	EF-hand_1	Domain	12	40	4.5e-40	133.0	EF hand domain
`XP_057783345.1`	Pfam	`PF13405`	EF-hand_6	Domain	12	40	3.7e-31	104.5	EF-hand domain
`XP_057783345.1`	Pfam	`PF13499`	EF-hand_7	Domain	12	73	1.1e-40	138.5	EF-hand domain pair
`XP_057783345.1`	Pfam	`PF13202`	EF-hand_5	Domain	13	36	1.9e-26	91.0	EF hand
`XP_057783345.1`	Pfam	`PF13833`	EF-hand_8	Domain	25	74	4.4e-26	91.1	EF-hand domain pair
`XP_057783345.1`	Pfam	`PF00036`	EF-hand_1	Domain	48	74	4.5e-40	133.0	EF hand domain
`XP_057783345.1`	Pfam	`PF13202`	EF-hand_5	Domain	50	73	1.9e-26	91.0	EF hand
`XP_057783345.1`	Pfam	`PF13833`	EF-hand_8	Domain	83	107	4.4e-26	91.1	EF-hand domain pair
`XP_057783345.1`	Pfam	`PF13499`	EF-hand_7	Domain	83	147	1.1e-40	138.5	EF-hand domain pair
`XP_057783345.1`	Pfam	`PF00036`	EF-hand_1	Domain	85	112	4.5e-40	133.0	EF hand domain
`XP_057783345.1`	Pfam	`PF13405`	EF-hand_6	Domain	85	114	3.7e-31	104.5	EF-hand domain
`XP_057783345.1`	Pfam	`PF13202`	EF-hand_5	Domain	86	110	1.9e-26	91.0	EF hand
`XP_057783345.1`	Pfam	`PF13833`	EF-hand_8	Domain	105	146	4.4e-26	91.1	EF-hand domain pair
`XP_057783345.1`	Pfam	`PF00036`	EF-hand_1	Domain	121	148	4.5e-40	133.0	EF hand domain
`XP_057783345.1`	Pfam	`PF13202`	EF-hand_5	Domain	124	146	1.9e-26	91.0	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927362.1
AAATTCAATGCATTTACTAGGCTTTGCTGTCCAGTTTCATTCAAATTCTACAAATAGCCCACCAAGCCTTGAGCTATACTCAACTCTCTCTCTCTCTCTCCAAATACACACACACACACACACACACAGCCCCAAAGAAGCCACATGGCTGATATACTGAATGCAGAGCAAATTGTTGAATTACAGGAAGCCTTCAGACTGTTTGACAAAGATGGAGATGGGTGCATAACCATAGAAGAACTAGCGACAGTGATTAGGTC...

XM_057927360.1
TACTAGGCTTTGCTGTCCAGTTTCATTCAAATTCTACAAATAGCCCACCAAGCCTTGAGCTATACTCAACTCTCTCTCTCTCTCTCCAAATACACACACACACACACACACACAGCCCCAAAGAAGCCACATGGCTGATATACTGAATGCAGAGCAAATTGTTGAATTACAGGAAGCCTTCAGACTGTTTGACAAAGATGGAGATGGGTGCATAACCATAGAAGAACTAGCGACAGTGATTAGGTCTCTAGATCAAAATC...

CDS

2 records

下载 CDS FASTA

LOC131001116
ATGGCTGATATACTGAATGCAGAGCAAATTGTTGAATTACAGGAAGCCTTCAGACTGTTTGACAAAGATGGAGATGGGTGCATAACCATAGAAGAACTAGCGACAGTGATTAGGTCTCTAGATCAAAATCCCAGCGAGGAAGAGCTCCACGACATGATCAACGAAGTCGACATCGATGGCAACGGCACCATTGAATTCGCCGAGTTCTTGAACCTCATGGCCAACAAAATGAAGGTTTCTTCTTATCGCTCTTACATCAT...

Protein

2 records

下载 Protein FASTA

XP_057783343.1
MADILNAEQIVELQEAFRLFDKDGDGCITIEELATVIRSLDQNPSEEELHDMINEVDIDGNGTIEFAEFLNLMANKMKVSSYRSYIINTFFFSLVFTLCVCVCAVFNQETDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIREADLDGDGQVDYDEFVKMMMAIG

XP_057783345.1
MADILNAEQIVELQEAFRLFDKDGDGCITIEELATVIRSLDQNPSEEELHDMINEVDIDGNGTIEFAEFLNLMANKMKETDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVDQMIREADLDGDGQVDYDEFVKMMMAIG

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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