Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001574`

染色体: Chr08 坐标: 12945969-12949025 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001574`
名称	SmilChr08G001574
描述	ATP sulfurylase 1, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	12945969 - 12949025 / `-`

ID 对照

NCBI Gene ID	`LOC131001117`
GeneID	`131001117`
locus_tag	`-`
NCBI Name	`LOC131001117`
原始查询	`LOC131001117`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	ATP sulfurylase 1, chloroplastic-like
产物	ATP sulfurylase 1%2C chloroplastic-like
Arabidopsis	`AT3G22890` (APS1) ATP sulfurylase 1 [Source:NCBI gene (formerly Entrezgene);Acc:821861] identity=78.1; qcov=1.01; evalue=0; confidence=high
Rice	`Os03g0743900` (OsATPS) - identity=76.7; qcov=0.911; evalue=0; confidence=high
GO	GO:0000103 (sulfate assimilation); GO:0004020 (adenylylsulfate kinase activity); GO:0004781 (sulfate adenylyltransferase (ATP) activity)
KEGG	smil00230 (Purine metabolism - Salvia miltiorrhiza (redroot sage)); smil00261 (Monobactam biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00450 (Selenocompound metabolism - Salvia miltiorrhiza (redroot sage)); smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01320 (Sulfur cycle - Salvia miltiorrhiza (redroot sage))
Pfam	PF01747 (ATP-sulfurylase); PF14306 (PUA_2)
InterPro	-
eggNOG	-
NR	GeneID:131001117

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057783346.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057783346.1`
3	Nucleus	细胞核	0.00000	`XP_057783346.1`
4	Chromosome	染色体	0.00000	`XP_057783346.1`
5	Centromere	着丝粒	0.00000	`XP_057783346.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:12946196`	`C`	`CAT`	2bp_insertion	frameshift_variant	92	A10,A18,A19,A24,A4,A8,B101,B102,B103,B107,B109,B11,B114,B115,B119,B120,B122,B125,B13,B130,B131,B132,B138,B139,B14,B140,B18,B19,B22,B29,B3,B30,B33,B35,B36,B40,B42,B43,B45,B49,B5,B51,B52,B6,B60,B62,B63,B65,B68,B71,B72,B73,B81,B84,B85,B87,B88,B93,B94,B97,B98,B99,C19,C21,C27,C28,C32,C35,C36,C41,C42,C43,C44,C45,C53,C57,C60,C61,C67,C68,C73,C74,C75,C77,C78,C8,C80,C81,C83,C84,C85,D6
`Chr8:12947060`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr8:12947159`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B44
`Chr8:12947292`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr8:12947371`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr8:12948245`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C34,D2
`Chr8:12948293`	`GGC`	`G`	2bp_deletion	frameshift_variant	1	A24
`Chr8:12948293`	`GGC`	`G`	2bp_deletion	CDS_variant	1	A24
`Chr8:12948437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783346.1

512 aa

256

512

PUA_2

ATP-sulfurylase

PF14306 PUA_2 50-212 aa PF01747 ATP-sulfurylase 222-420 aa

XP_057783347.1

462 aa

231

462

PUA_2

ATP-sulfurylase

PF14306 PUA_2 50-212 aa PF01747 ATP-sulfurylase 222-443 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783346.1`	Pfam	`PF14306`	PUA_2	Domain	50	212	1.6e-45	155.2	PUA-like domain
`XP_057783346.1`	Pfam	`PF01747`	ATP-sulfurylase	Domain	222	420	2.5e-58	197.7	ATP-sulfurylase
`XP_057783347.1`	Pfam	`PF14306`	PUA_2	Domain	50	212	1.1e-45	155.8	PUA-like domain
`XP_057783347.1`	Pfam	`PF01747`	ATP-sulfurylase	Domain	222	443	4.7e-66	222.9	ATP-sulfurylase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927364.1
TTGAATGCACATATGAAGAAGGTCGAAAGTAGAAGGAAAGAGGTGAAACCAAATTGCGTCCAGATTCATCCCCCCAGATATGCTCCAACCTTATAAAACCAGACAAATCACATCTCTTATTAATTCCATCCAAAACCGAAGGTGCTCCTCCCACTCATCATTCAATTTCCCCAAAATACCCTTGTCCCCAAATTTAATCCCGAAATCACCCTTGTAATCAGAATTTCATTTGGTAATCTGCCCCTAATTAAGATCCCTCT...

XM_057927363.1
TTGAATGCACATATGAAGAAGGTCGAAAGTAGAAGGAAAGAGGTGAAACCAAATTGCGTCCAGATTCATCCCCCCAGATATGCTCCAACCTTATAAAACCAGACAAATCACATCTCTTATTAATTCCATCCAAAACCGAAGGTGCTCCTCCCACTCATCATTCAATTTCCCCAAAATACCCTTGTCCCCAAATTTAATCCCGAAATCACCCTTGTAATCAGAATTTCATTTGGTAATCTGCCCCTAATTAAGATCCCTCT...

CDS

2 records

下载 CDS FASTA

LOC131001117
ATGGCAGCCATGGCCTCTCTTCACCTCAAAACATCCTCATCTCACCCCCATTCCATCTCCAAATTACCAAAACCCTATTCACCCGCCGCCCTCAGACTCCCCCTCCGCCGCCGCCCGGCACCGGCGACCCGGATTTCGGCCTCCCTCATCGACCCGGACGGCGGAAAACTCGTTGAGCTCTTCGTTCCGGAATCCGAGAAGAATTCGAAATTGAAGCTGGCGTCGGGGCTGCCGAGGATCACGCTGTCGGAAATCGATCT...

Protein

2 records

下载 Protein FASTA

XP_057783346.1
MAAMASLHLKTSSSHPHSISKLPKPYSPAALRLPLRRRPAPATRISASLIDPDGGKLVELFVPESEKNSKLKLASGLPRITLSEIDLQWVHVLSEGWASPLKGFMREAEFLQTLHFNSLRLENGSVVNMSVPIVLAIDDAQKNRVGSSASVALVDDRDDVVAVLSNIEIYKHNKEERIARTWGTTAPGLPYVDEAITDAGNWLVGGDLEVINPVKYEDGLDRFRLSPAQLREEFERRNADAVFAFQLRNPVHNGHALLMT...

XP_057783347.1
MAAMASLHLKTSSSHPHSISKLPKPYSPAALRLPLRRRPAPATRISASLIDPDGGKLVELFVPESEKNSKLKLASGLPRITLSEIDLQWVHVLSEGWASPLKGFMREAEFLQTLHFNSLRLENGSVVNMSVPIVLAIDDAQKNRVGSSASVALVDDRDDVVAVLSNIEIYKHNKEERIARTWGTTAPGLPYVDEAITDAGNWLVGGDLEVINPVKYEDGLDRFRLSPAQLREEFERRNADAVFAFQLRNPVHNGHALLMT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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