Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001581`

染色体: Chr08 坐标: 13043982-13047788 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001581`
名称	SmilChr08G001581
描述	VAN3-binding protein-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	13043982 - 13047788 / `-`

ID 对照

NCBI Gene ID	`LOC131001125`
GeneID	`131001125`
locus_tag	`-`
NCBI Name	`LOC131001125`
原始查询	`LOC131001125`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	VAN3-binding protein-like
产物	VAN3-binding protein-like
Arabidopsis	`AT3G22810` (AT3G22810) auxin canalization protein (DUF828) [Source:NCBI gene (formerly Entrezgene);Acc:821852] identity=66.8; qcov=1.02; evalue=0; confidence=high
Rice	`Os03g0635800` - identity=64.6; qcov=0.67; evalue=1.53e-82; confidence=high
GO	GO:0009734 (auxin-activated signaling pathway); GO:0010087 (phloem or xylem histogenesis); GO:0010305 (leaf vascular tissue pattern formation)
KEGG	-
Pfam	PF05703 (Auxin_canalis); PF08458 (PH_2)
InterPro	-
eggNOG	-
NR	GeneID:131001125

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057783354.1`
2	Cytosol	细胞质基质	0.40000	`XP_057783354.1`
3	Nucleus	细胞核	0.00000	`XP_057783354.1`
4	Chromosome	染色体	0.00000	`XP_057783354.1`
5	Centromere	着丝粒	0.00000	`XP_057783354.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:13044554`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B46,C14
`Chr8:13044571`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C34
`Chr8:13045391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:13045462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B67,B7,C33,C51
`Chr8:13045666`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A16,C25
`Chr8:13045720`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:13045735`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr8:13045785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B44,C82
`Chr8:13045869`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,D11
`Chr8:13047309`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:13047321`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B119,B64,C10,C38,D8
`Chr8:13047379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B31

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783354.1

452 aa

226

452

Auxin_canalis

PH_2

PF05703 Auxin_canalis 13-297 aa PF08458 PH_2 341-445 aa

XP_057783355.1

451 aa

226

451

Auxin_canalis

PH_2

PF05703 Auxin_canalis 13-296 aa PF08458 PH_2 340-444 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783354.1`	Pfam	`PF05703`	Auxin_canalis	Family	13	297	3e-113	378.9	Auxin canalisation
`XP_057783354.1`	Pfam	`PF08458`	PH_2	Domain	341	445	8.3e-43	145.8	Plant pleckstrin homology-like region
`XP_057783355.1`	Pfam	`PF05703`	Auxin_canalis	Family	13	296	1.4e-112	376.6	Auxin canalisation
`XP_057783355.1`	Pfam	`PF08458`	PH_2	Domain	340	444	8.3e-43	145.8	Plant pleckstrin homology-like region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927371.1
ATCACTTTAAATTTTGTCTCTACTTTCTCATAAAATAATCTCTGCGAGCTTTTCGTCTCTGCAACTGTAAGCCGTAGCAGACAACACTCTCTCACCAGTCTCTCTCTAAAGAGAGAGAGAGAGAGATAGAGAGAGAGATTGACACATACCCGATTAACTGTTCCTTTCTCTCTCCAACATCTCTATAAAGAAGTGAGTGACCTCATTTATCCACATCCCATGATCCCATTGAACAACTGGTCGTCCATTTTATTTAAATC...

XM_057927372.1
TTGTCTCTACTTTCTCATAAAATAATCTCTGCGAGCTTTTCGTCTCTGCAACTGTAAGCCGTAGCAGACAACACTCTCTCACCAGTCTCTCTCTAAAGAGAGAGAGAGAGAGATAGAGAGAGAGATTGACACATACCCGATTAACTGTTCCTTTCTCTCTCCAACATCTCTATAAAGAAGTGAGTGACCTCATTTATCCACATCCCATGATCCCATTGAACAACTGGTCGTCCATTTTATTTAAATCAAAATAGCGCCAC...

CDS

2 records

下载 CDS FASTA

LOC131001125
ATGGATGGCGCCCAGCTTCACCACATGTATAAACCACCTGAAACTCCAAGAGAGCCAATGGAATTCCTCTCGCGCTCCTGGAGCGCCTCAGCTTTTCAAATCTCCAAAGCTCTAGCTCCGCTGCCGCCCCCCAACAACATTCCTGAAATTGGCGCCGATATCATACTCGAAGATATCTCGGCCGAGATGGAGTCCGCCGCCGCTGTCGTCGGAAACCCTTTCGCCTTTGCTTCTTCCCAGACCTCTCAGCTTGTTATGGA...

Protein

2 records

下载 Protein FASTA

XP_057783354.1
MDGAQLHHMYKPPETPREPMEFLSRSWSASAFQISKALAPLPPPNNIPEIGADIILEDISAEMESAAAVVGNPFAFASSQTSQLVMERIMSQSQDVSPRTSGRLSHSSGPLNGGSISDSPPVSPSEMDDLKLINDHVSSSNQIKSSFVVGTSAGGRKTVGRWLKDRKEKKKEEVRAQNAQLHAAISVAGVAAAIAAIAAATAVSSGARKDEQMTKTDMAVASAATLVAAQCVEAAEAMGAEREHLASVVSSAVNVQSPGD...

XP_057783355.1
MDGAQLHHMYKPPETPREPMEFLSRSWSASAFQISKALAPLPPPNNIPEIGADIILEDISAEMESAAAVVGNPFAFASSQTSQLVMERIMSQSDVSPRTSGRLSHSSGPLNGGSISDSPPVSPSEMDDLKLINDHVSSSNQIKSSFVVGTSAGGRKTVGRWLKDRKEKKKEEVRAQNAQLHAAISVAGVAAAIAAIAAATAVSSGARKDEQMTKTDMAVASAATLVAAQCVEAAEAMGAEREHLASVVSSAVNVQSPGDI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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