Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001589`

染色体: Chr08 坐标: 13131642-13136128 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001589`
名称	SmilChr08G001589
描述	protein tesmin/TSO1-like CXC 3
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	13131642 - 13136128 / `-`

ID 对照

NCBI Gene ID	`LOC131001134`
GeneID	`131001134`
locus_tag	`-`
NCBI Name	`LOC131001134`
原始查询	`LOC131001134`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein tesmin/TSO1-like CXC 3
产物	protein tesmin/TSO1-like CXC 3
Arabidopsis	`AT4G14770` (TCX2) TESMIN/TSO1-like CXC 2 [Source:NCBI gene (formerly Entrezgene);Acc:827132] identity=40.8; qcov=1.04; evalue=3.37e-138; confidence=medium
Rice	`Os07g0176200` - identity=42.8; qcov=0.752; evalue=1.83e-103; confidence=medium
GO	GO:0003700 (DNA-binding transcription factor activity)
KEGG	-
Pfam	PF03638 (TCR)
InterPro	-
eggNOG	-
NR	GeneID:131001134

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783367.1`
2	Chromosome	染色体	0.00000	`XP_057783367.1`
3	Centromere	着丝粒	0.00000	`XP_057783367.1`
4	Chromatin	染色质	0.00000	`XP_057783367.1`
5	Telomere	端粒	0.00000	`XP_057783367.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783367.1

740 aa

370

740

TCR

PF03638 TCR 457-492 aa PF03638 TCR 542-578 aa

XP_057783368.1

706 aa

353

706

TCR

PF03638 TCR 423-458 aa PF03638 TCR 508-544 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783367.1`	Pfam	`PF03638`	TCR	Domain	457	492	3.5e-24	85.5	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057783367.1`	Pfam	`PF03638`	TCR	Domain	542	578	3.5e-24	85.5	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057783368.1`	Pfam	`PF03638`	TCR	Domain	423	458	3.1e-24	85.7	Tesmin/TSO1-like CXC domain, cysteine-rich domain
`XP_057783368.1`	Pfam	`PF03638`	TCR	Domain	508	544	3.1e-24	85.7	Tesmin/TSO1-like CXC domain, cysteine-rich domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927384.1
CGCTGTTTTCCCTCCCAACAACAACAGCCCTTTTTTGGCTTAGTTTGCTGTGCATATATAACTTCATCCACAATGCAACACAGCAGCAACTGTATTTTTTCTTTCTAAGTTTCTTTTATATTTGTTGGGGTAGTGGGGTCTCGATTTTCTACTTGAAGAAAAATCCCTTCTTTATTTCTTTTTTCTTTGCTGACCTCCGTTTCCCGCTCCTTTCTTCAATCTCAGCCACTTTCGTTTGACTCCTTTGTTTCTTACAAACC...

XM_057927385.1
CAACAACAACAGCCCTTTTTTGGCTTAGTTTGCTGTGCATATATAACTTCATCCACAATGCAACACAGCAGCAACTGTATTTTTTCTTTCTAAGTTTCTTTTATATTTGTTGGGGTAGTGGGGTCTCGATTTTCTACTTGAAGAAAAATCCCTTCTTTATTTCTTTTTTCTTTGCTGACCTCCGTTTCCCGCTCCTTTCTTCAATCTCAGCCACTTTCGTTTGACTCCTTTGTTTCTTACAAACCAAACAAAAGAAAAGA...

CDS

2 records

下载 CDS FASTA

LOC131001134
ATGGGGGATTGTAGAGGGGAGAGAGAACTCATGGATACTCCAGAGAGAACCAACAACACCCAGATCGCCACTTCCATTGCCAAATTTGAGGACTCCCCTGTCTTTAACTTTCTCAACAATCTTTCCCCTATCAAGCCGGTTAAACCGGTACACATCTCTCAGACGATAAATCCACTTAGCTTCTCTTCCCTTCCATCCGTGTTCAGTTCACCGCATCTTACTTCCCTCAGGGAATCTAGATTTCTTCGCAGGCATAGTCT...

Protein

2 records

下载 Protein FASTA

XP_057783367.1
MGDCRGERELMDTPERTNNTQIATSIAKFEDSPVFNFLNNLSPIKPVKPVHISQTINPLSFSSLPSVFSSPHLTSLRESRFLRRHSLSDPSKPEFSSDDGNTVDPNMQVAMNLDEQKENLDANCENAGEPSYGCSKLVVEFAETLNCELDIVNSSLSCLKAKRVAEYACTSSAFVEDQRSVNMGEANLEELVNTNGNSWDSLIADASDLLIFESPNAEAYNEPVDPATTFYRSIRNAIQNAQSLGAVVCGERGNTAENMP...

XP_057783368.1
MGDCRGERELMDTPERTNNTQIATSIAKFEDSPVFNFLNNLSPIKPVKPVHISQTINPLSFSSLPSVFSSPHLTSLRESRFLRRHSLSDPSKPEFSSDDGNTVDPNMQVAMNLDEQKENLDANCENAGEPSYGCSKLVVEFAETLNCELDIVNSSLSCLKAKRVAEYACTSSAFVEDQRSVNMEAYNEPVDPATTFYRSIRNAIQNAQSLGAVVCGERGNTAENMPRQPEEGTEMIENGDASFLNSNQKMDYENLSGLCR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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