Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001593`

染色体: Chr08 坐标: 13172054-13178133 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001593`
名称	SmilChr08G001593
描述	DExH-box ATP-dependent RNA helicase DExH16, mitochondrial-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	13172054 - 13178133 / `-`

ID 对照

NCBI Gene ID	`LOC131001142`
GeneID	`131001142`
locus_tag	`-`
NCBI Name	`LOC131001142`
原始查询	`LOC131001142`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DExH-box ATP-dependent RNA helicase DExH16, mitochondrial-like
产物	DExH-box ATP-dependent RNA helicase DExH16%2C mitochondrial-like
Arabidopsis	`AT4G14790` (ATSUV3) ATP-dependent RNA helicase [Source:NCBI gene (formerly Entrezgene);Acc:827134] identity=72.9; qcov=0.909; evalue=0; confidence=high
Rice	`Os03g0746500` (OsSUV3) - identity=71.7; qcov=0.92; evalue=0; confidence=high
GO	GO:0000965 (mitochondrial RNA 3'-end processing); GO:0003724 (RNA helicase activity); GO:0005524 (ATP binding); GO:0006401 (RNA catabolic process); GO:0016817 (hydrolase activity, acting on acid anhydrides); GO:0045025 (mitochondrial degradosome)
KEGG	-
Pfam	PF00271 (Helicase_C); PF12513 (SUV3_C); PF18147 (Suv3_C_1); PF22527 (DEXQc_Suv3)
InterPro	-
eggNOG	-
NR	GeneID:131001142

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057783389.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057783389.1`
3	Nucleus	细胞核	0.00000	`XP_057783389.1`
4	Chromosome	染色体	0.00000	`XP_057783389.1`
5	Centromere	着丝粒	0.00000	`XP_057783389.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:13172990`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B103,B51
`Chr8:13173022`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B124,B17,D6
`Chr8:13173049`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B139,B47
`Chr8:13173224`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C24,C56
`Chr8:13174153`	`TGA`	`T`	2bp_deletion	frameshift_variant	1	B39
`Chr8:13174153`	`TGA`	`T`	2bp_deletion	CDS_variant	1	B39
`Chr8:13175703`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B37
`Chr8:13175756`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B7,C33
`Chr8:13176622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783389.1

555 aa

278

555

DEXQc_Suv3

Helicase_C

Suv3_C_1

SUV3_C

PF22527 DEXQc_Suv3 60-213 aa PF00271 Helicase_C 233-338 aa PF18147 Suv3_C_1 421-461 aa PF12513 SUV3_C 487-532 aa

XP_057783390.1

552 aa

276

552

DEXQc_Suv3

Helicase_C

Suv3_C_1

SUV3_C

PF22527 DEXQc_Suv3 60-213 aa PF00271 Helicase_C 233-338 aa PF18147 Suv3_C_1 421-461 aa PF12513 SUV3_C 487-532 aa

XP_057783391.1

552 aa

276

552

DEXQc_Suv3

Helicase_C

Suv3_C_1

SUV3_C

PF22527 DEXQc_Suv3 57-210 aa PF00271 Helicase_C 230-335 aa PF18147 Suv3_C_1 418-458 aa PF12513 SUV3_C 484-529 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783389.1`	Pfam	`PF22527`	DEXQc_Suv3	Domain	60	213	2.9e-64	216.0	DEXQ-box helicase domain of Suv3
`XP_057783389.1`	Pfam	`PF00271`	Helicase_C	Domain	233	338	9.1e-13	49.1	Helicase conserved C-terminal domain
`XP_057783389.1`	Pfam	`PF18147`	Suv3_C_1	Domain	421	461	8.8e-11	42.3	Suv3 C-terminal domain 1
`XP_057783389.1`	Pfam	`PF12513`	SUV3_C	Domain	487	532	2.8e-15	56.6	ATP-dependent RNA helicase SUV3 C-terminal domain
`XP_057783390.1`	Pfam	`PF22527`	DEXQc_Suv3	Domain	60	213	2.8e-64	216.0	DEXQ-box helicase domain of Suv3
`XP_057783390.1`	Pfam	`PF00271`	Helicase_C	Domain	233	338	9.1e-13	49.1	Helicase conserved C-terminal domain
`XP_057783390.1`	Pfam	`PF18147`	Suv3_C_1	Domain	421	461	8.8e-11	42.3	Suv3 C-terminal domain 1
`XP_057783390.1`	Pfam	`PF12513`	SUV3_C	Domain	487	532	2.8e-15	56.6	ATP-dependent RNA helicase SUV3 C-terminal domain
`XP_057783391.1`	Pfam	`PF22527`	DEXQc_Suv3	Domain	57	210	2.9e-64	216.0	DEXQ-box helicase domain of Suv3
`XP_057783391.1`	Pfam	`PF00271`	Helicase_C	Domain	230	335	9.1e-13	49.1	Helicase conserved C-terminal domain
`XP_057783391.1`	Pfam	`PF18147`	Suv3_C_1	Domain	418	458	8.8e-11	42.3	Suv3 C-terminal domain 1
`XP_057783391.1`	Pfam	`PF12513`	SUV3_C	Domain	484	529	2.8e-15	56.6	ATP-dependent RNA helicase SUV3 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927406.1
ATTAATATTGTTCTCATCCTTGAGGACCTAACTGTAAAACTCTCCTTCTTCCATTAAACAGATTTCAAGCTAAACAGAGAAGCCAAACATTTTCGGAGTCGGCGGGTTAACGCCGAAATTCTTCCTTCGCCTCCACTAAAATCTCGCGCCACCAATTTTCCCAATATATCGATATTTAGTTTTTCCCTATTGTAATTTCCCTATCATGACAACCTCCATTTGATTTGGCTCCGAACCTTGCGAAATTTACACTTTAATTA...

XM_057927407.1
CATCCTTGAGGACCTAACTGTAAAACTCTCCTTCTTCCATTAAACAGATTTCAAGCTAAACAGAGAAGCCAAACATTTTCGGAGTCGGCGGGTTAACGCCGAAATTCTTCCTTCGCCTCCACTAAAATCTCGCGCCACCAATTTTCCCAATATATCGATATTTAGTTTTTCCCTATTGTAATTTCCCTATCATGACAACCTCCATTTGATTTGGCTCCGAACCTTGCGAAATTTACACTTTAATTAAGGATATTACTCAA...

CDS

3 records

下载 CDS FASTA

LOC131001142
ATGAGCTCCTTGCTTTTCCGCAGGAGGATTTCTCCGTCATTGCTTCCCGATAATACAGATGTCTATTACTCTAGGTGGGAGTCGAAGTTTAGAACTTCGTGTGCCATCTATCAATGCATACAGAAACTCAGCAGCTATAGAACGAGTTCGAAGTTTGATTTTACAGACCTCACGCGTCCTCATACATGGTATCCTGTTGCTCGACGAAAGAAACGGAATGTAATATTACATGTTGGTCCAACAAATAGTGGCAAAACATA...

LOC131001142
ATGAGCTCCTTGCTTTTCCGCAGGAGGATTTCTCCGTCATTGCTTCCCGATGTCTATTACTCTAGGTGGGAGTCGAAGTTTAGAACTTCGTGTGCCATCTATCAATGCATACAGAAACTCAGCAGCTATAGAACGAGTTCGAAGTTTGATTTTACAGACCTCACGCGTCCTCATACATGGTATCCTGTTGCTCGACGAAAGAAACGGAATGTAATATTACATGTTGGTCCAACAAATAGTGGCAAAACATATCATGCTCT...

Protein

3 records

下载 Protein FASTA

XP_057783389.1
MSSLLFRRRISPSLLPDNTDVYYSRWESKFRTSCAIYQCIQKLSSYRTSSKFDFTDLTRPHTWYPVARRKKRNVILHVGPTNSGKTYHALKRLESSPSGIYCGPLRLLAWEVAQRLNKAKVPCELITGQEREEIDGAKHKAVTVEMSDVNSDYSCAVVDEIQMLGCRTRGFSFTRALLGICADELHLCGDPAAVPLVKEMLKVTDDVVEVKYYERLSPLVPLDVPLGSFSKIQTGDCIVTFSRYEIYKMKRLIEDQRQHL...

XP_057783390.1
MSSLLFRRRISPSLLPDNTDVYYSRWESKFRTSCAIYQCIQKLSSYRTSSKFDFTDLTRPHTWYPVARRKKRNVILHVGPTNSGKTYHALKRLESSPSGIYCGPLRLLAWEVAQRLNKAKVPCELITGQEREEIDGAKHKAVTVEMSDVNSDYSCAVVDEIQMLGCRTRGFSFTRALLGICADELHLCGDPAAVPLVKEMLKVTDDVVEVKYYERLSPLVPLDVPLGSFSKIQTGDCIVTFSRYEIYKMKRLIEDQRQHL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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