Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001615`

染色体: Chr08 坐标: 13383181-13385585 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001615`
名称	SmilChr08G001615
描述	FCS-Like Zinc finger 8-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	13383181 - 13385585 / `+`

ID 对照

NCBI Gene ID	`LOC131001160`
GeneID	`131001160`
locus_tag	`-`
NCBI Name	`LOC131001160`
原始查询	`LOC131001160`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FCS-Like Zinc finger 8-like
产物	FCS-Like Zinc finger 8-like
Arabidopsis	`AT3G22550` (AT3G22550) NAD(P)H-quinone oxidoreductase subunit, putative (DUF581) [Source:NCBI gene (formerly Entrezgene);Acc:821826] identity=45.5; qcov=0.943; evalue=6.09e-52; confidence=high
Rice	`Os03g0665200` (OSJNBb0031A14.9) - identity=39.2; qcov=0.811; evalue=1.07e-36; confidence=medium
GO	-
KEGG	-
Pfam	PF04570 (zf-FLZ)
InterPro	-
eggNOG	-
NR	GeneID:131001160

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783420.1`
2	Cytoplasm	细胞质	1.00000	`XP_057783420.1`
3	Chromosome	染色体	0.00000	`XP_057783420.1`
4	Centromere	着丝粒	0.00000	`XP_057783420.1`
5	Chromatin	染色质	0.00000	`XP_057783420.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:13384260`	`T`	`TG`	1bp_insertion	frameshift_variant	2	B112,C59
`Chr8:13384260`	`T`	`TG`	1bp_insertion	CDS_variant	2	B112,C59
`Chr8:13384301`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr8:13384375`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B55,C50,D11
`Chr8:13384387`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B138,B55,C50,D11
`Chr8:13384555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B134,C11,C69
`Chr8:13384812`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,B37,D10
`Chr8:13385150`	`C`	`CA`	1bp_insertion	frameshift_variant	12	B10,B110,B129,B132,B82,B86,B91,C14,C52,C63,C67,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783420.1

300 aa

150

300

zf-FLZ

PF04570 zf-FLZ 231-280 aa

XP_057783421.1

280 aa

140

280

zf-FLZ

PF04570 zf-FLZ 231-261 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783420.1`	Pfam	`PF04570`	zf-FLZ	Domain	231	280	1.5e-22	79.5	zinc-finger of the FCS-type, C2-C2
`XP_057783421.1`	Pfam	`PF04570`	zf-FLZ	Domain	231	261	1.3e-10	41.2	zinc-finger of the FCS-type, C2-C2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927437.1
TCCACCCAAAACCCCCTACTACCTAATCAAAGCACCGCCAGTAAAATTTCTGGGTGAAAGAAAGAGAAAGGTGGATTTATTTAAACCACTGATTTTCATGCACACGCGTCTTTAAATTCAGCATCTCTAGAAGAAAAATTTCTCTCTCTCTCTTCCCCCATTTCTTTCTGTAATTTTCCAGTGGGCATTTAGTCAGTTTTTACAGAGCTAGTGAAGAGTAGAAAAAAGAAACGAAAAAGATGGTATTTAGTGGGGGGCAA...

XM_057927438.1
TAAATTCAGCATCTCTAGAAGAAAAATTTCTCTCTCTCTCTTCCCCCATTTCTTTCTGTAATTTTCCAGTGGGCATTTAGTCAGTTTTTACAGAGCTAGTGAAGAGTAGAAAAAAGAAACGAAAAAGATGGTATTTAGTGGGGGGCAAAGATAAAGTGTTCCCACTTTGAGCTGGTAAAAGGGAATTCATAGACAAAAAAAACACTCATCACTCTTTTTGTTTTCTTCTTCACGATTTTTCTTTTTTCTTTTTTCAACTT...

CDS

2 records

下载 CDS FASTA

LOC131001160
ATGGCAGATTATACCTCTCTGCAATCCCCAAAGGAAAATTACAGACAGCCCCTTTCCTCAATTTTCACTTCACCTAGGTTGTTCACTAGTTTTGTCTCAAAGGGCTCTCTTGAAACTGAATCTTTAACTAGCCCCACTTCAATCATGGATACCAAACCATTTTGTGTTCTAAAAAACCCCTTTAAGTCTGAGACAAACTCCCCAAAACCAGAATGCAAGAATCATTGGGATAAATTGGAGTGGAGAGGGGTTAGCCTTGG...

Protein

2 records

下载 Protein FASTA

XP_057783420.1
MADYTSLQSPKENYRQPLSSIFTSPRLFTSFVSKGSLETESLTSPTSIMDTKPFCVLKNPFKSETNSPKPECKNHWDKLEWRGVSLGLIDALIDENSQSNVSKHDSRMVLFGSQLRIHVPPLPPSVASPTDSPKSPCDFGIKTRHSHVGSPSPSPSTNFRRSPFGSINSGGLSSLSASEMELSEDYTCVISYGPNPRTTHIFDDCIVESCCGVVKFSESRKENAFFSMNHSMSYPSESFLSFCYSCKKNLGQGKDIYMYR...

XP_057783421.1
MADYTSLQSPKENYRQPLSSIFTSPRLFTSFVSKGSLETESLTSPTSIMDTKPFCVLKNPFKSETNSPKPECKNHWDKLEWRGVSLGLIDALIDENSQSNVSKHDSRMVLFGSQLRIHVPPLPPSVASPTDSPKSPCDFGIKTRHSHVGSPSPSPSTNFRRSPFGSINSGGLSSLSASEMELSEDYTCVISYGPNPRTTHIFDDCIVESCCGVVKFSESRKENAFFSMNHSMSYPSESFLSFCYSCKKNLGQGKDIYMYS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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