Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001620`

染色体: Chr08 坐标: 13420644-13423943 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001620`
名称	SmilChr08G001620
描述	uncharacterized SmilChr08G001620
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	13420644 - 13423943 / `+`

ID 对照

NCBI Gene ID	`LOC131001167`
GeneID	`131001167`
locus_tag	`-`
NCBI Name	`LOC131001167`
原始查询	`LOC131001167`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837044]; symbol=AT1G05430; hit=AT1G05430; species=arabidopsis; confidence=low
产物	uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837044]; symbol=AT1G05430; hit=AT1G05430; species=arabidopsis; confidence=low
Arabidopsis	`AT1G05430` (AT1G05430) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:837044] identity=33.5; qcov=1.12; evalue=4.46e-21; confidence=low
Rice	`Os10g0430600` (OsMB46) - identity=26.3; qcov=0.722; evalue=5.92e-11; confidence=low
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131001167

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057783461.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057783461.1`
3	Mitochondrion inner membrane	线粒体内膜	0.20000	`XP_057783461.1`
4	Nucleus	细胞核	0.00000	`XP_057783461.1`
5	Chromosome	染色体	0.00000	`XP_057783461.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:13421272`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B2
`Chr8:13421569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr8:13422627`	`ACT`	`A`	2bp_deletion	frameshift_variant	1	B135
`Chr8:13422627`	`ACT`	`A`	2bp_deletion	CDS_variant	1	B135
`Chr8:13423081`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D4
`Chr8:13423336`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr8:13423348`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr8:13423425`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927478.1
TTATTTACTCAAATAAAAATGAGACGAAACGACGTCGTTGCCAACAATGAGGTTAATTTGGAATCAAATTCGTCGTACTCGTAGGGGTGCGGAGTGTGGAGAACTGGAGATGAAAATCAGCAGCAGTAGAACTCATTGATGAAATCATTTTTATCGCTTCACCTAGAAAATGGACGCTCTTCTAGATCTTGGACCAGTTCCCGGCTCAAAGAAGGGGCAATGGACACCTGAAGAAGTAAATTTACTGCATTCATGGAAAG...

XM_057927481.1
TTTACTCAAATAAAAATGAGACGAAACGACGTCGTTGCCAACAATGAGGTTAATTTGGAATCAAATTCGTCGTACTCGTAGGGGTGCGGAGTGTGGAGAACTGGAGATGAAAATCAGCAGCAGTAGAACTCATTGATGAAATCATTTTTATCGCTTCACCTAGAAAATGGACGCTCTTCTAGATCTTGGACCAGTTCCCGGCTCAAAGAAGGGGCAATGGACACCTGAAGAAGTAAATTTACTGCATTCATGGAAAGCTC...

CDS

3 records

下载 CDS FASTA

LOC131001167
ATGGACGCTCTTCTAGATCTTGGACCAGTTCCCGGCTCAAAGAAGGGGCAATGGACACCTGAAGAAGTAAATTTACTGCATTCATGGAAAGCTCCGGCTAGAAGAGATTTTTATGTTGGTGGTCTCGTCGGTTCAGTTGCTTCTTGGCTAGTGATGAAAAGACTACCTCAGAAGCCACGTCTTCTTCTTTCTGCGGGGACTGGTGTTGTTTTTGGACTGACACTATTGGTGAGATCTGCTAACTCATCTCTTGACTATAT...

Protein

3 records

下载 Protein FASTA

XP_057783461.1
MDALLDLGPVPGSKKGQWTPEEVNLLHSWKAPARRDFYVGGLVGSVASWLVMKRLPQKPRLLLSAGTGVVFGLTLLVRSANSSLDYMLSLHGTRVQRELVLRMLNRHQNDPRVHQRISKYFYAEVVYNDSSVDKALYRWRYRNSSGDLITPQTQGSPETNSNENDVKMTAKETKQVYASAGGNTVENPFDLIFGLPESIEEVPDQPDAPRILSRRQTRREKRLHHRRRHVRHEESEI

XP_057783462.1
MDALLDLGPVPGSKKGQWTPEEVNLLHSWKAPARRDFYVGGLVGSVASWLVMKRLPQKPRLLLSAGTGVVFGLTLLVRSANSSLDYMLSLHGTRVQRELVLRMLNRHQNDPRVHQRISKYFYAEVVYNDSSVDKALYRWRYRNSSGDLITPQTQGSPETNSNENDVKMTAKETKQVYASAGGNTVENPFDLIFGLPESIEEVPDQPDAPRILSRRQTRREKRLHHRRRHVRHEESEI

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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