当前解析结果
SmilChr01G004300| 统一新 Gene ID | SmilChr01G004300 |
|---|---|
| 名称 | SmilChr01G004300 |
| 描述 | FT-interacting protein 1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61176901 - 61179758 / - |
| NCBI Gene ID | LOC131001177 |
|---|---|
| GeneID | 131001177 |
| locus_tag | - |
| NCBI Name | LOC131001177 |
| 原始查询 | LOC131001177 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | FT-interacting protein 1 |
| 产物 | FT-interacting protein 1 |
| Arabidopsis | AT5G06850 (FTIP1)C2 calcium/lipid-binding plant phosphoribosyltransferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830576] identity=76.4; qcov=1; evalue=0; confidence=high |
| Rice | Os05g0370600 (OsFTIP7)- identity=66.8; qcov=0.999; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF00168 (C2); PF08372 (PRT_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001177 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.80000 | XP_057783477.1 |
| 2 | Cell membrane | 细胞膜 | 0.60000 | XP_057783477.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.60000 | XP_057783477.1 |
| 4 | Golgi apparatus | 高尔基体 | 0.20000 | XP_057783477.1 |
| 5 | Vesicle | 囊泡 | 0.20000 | XP_057783477.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61177070 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,C47 |
Chr1:61177349 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B4,C36,C70,C8,D6 |
Chr1:61177532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C59 |
Chr1:61177550 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A11,B25,C1,D11,D7 |
Chr1:61177720 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C81 |
Chr1:61177737 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B47 |
Chr1:61177737 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B47 |
Chr1:61177742 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B47 |
Chr1:61177749 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C60 |
Chr1:61177889 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:61178044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:61178064 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B27,C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783477.1PF00168
C2 50-155 aa
PF00168
C2 213-318 aa
PF00168
C2 376-485 aa
PF08372
PRT_C 630-785 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783477.1 |
Pfam | PF00168 |
C2 | Domain | 50 | 155 | 7.8e-66 | 219.6 | C2 domain |
XP_057783477.1 |
Pfam | PF00168 |
C2 | Domain | 213 | 318 | 7.8e-66 | 219.6 | C2 domain |
XP_057783477.1 |
Pfam | PF00168 |
C2 | Domain | 376 | 485 | 7.8e-66 | 219.6 | C2 domain |
XP_057783477.1 |
Pfam | PF08372 |
PRT_C | Family | 630 | 785 | 3e-79 | 265.0 | Plant phosphoribosyltransferase C-terminal |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。