Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001642`

染色体: Chr08 坐标: 13626103-13630027 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001642`
名称	SmilChr08G001642
描述	serine/threonine-protein phosphatase PP1 isozyme 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	13626103 - 13630027 / `+`

ID 对照

NCBI Gene ID	`LOC131001185`
GeneID	`131001185`
locus_tag	`-`
NCBI Name	`LOC131001185`
原始查询	`LOC131001185`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein phosphatase PP1 isozyme 2-like
产物	serine/threonine-protein phosphatase PP1 isozyme 2-like
Arabidopsis	`AT2G39840` (TOPP4) type one serine/threonine protein phosphatase 4 [Source:NCBI gene (formerly Entrezgene);Acc:818571] identity=83; qcov=0.936; evalue=0; confidence=high
Rice	`Os03g0268000` (OsPP1) - identity=86.4; qcov=0.924; evalue=0; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0005634 (nucleus); GO:0005737 (cytoplasm)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00149 (Metallophos); PF16891 (STPPase_N)
InterPro	-
eggNOG	-
NR	GeneID:131001185

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783482.1`
2	Cytoplasm	细胞质	1.00000	`XP_057783482.1`
3	Cytosol	细胞质基质	0.80000	`XP_057783482.1`
4	Nucleoplasm	核质	0.40000	`XP_057783482.1`
5	Chromosome	染色体	0.20000	`XP_057783482.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:13626503`	`AC`	`A`	1bp_deletion	frameshift_variant	1	A7
`Chr8:13626503`	`AC`	`A`	1bp_deletion	CDS_variant	1	A7
`Chr8:13628332`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C20
`Chr8:13628381`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B134,B137,C11,C46,C69
`Chr8:13628540`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B80
`Chr8:13629028`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:13629167`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B34,C47

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783482.1

332 aa

166

332

STPPase_N

Metallophos

PF16891 STPPase_N 6-52 aa PF00149 Metallophos 54-247 aa

XP_057783483.1

327 aa

164

327

STPPase_N

Metallophos

PF16891 STPPase_N 6-52 aa PF00149 Metallophos 54-247 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783482.1`	Pfam	`PF16891`	STPPase_N	Family	6	52	2.7e-19	70.1	Serine-threonine protein phosphatase N-terminal domain
`XP_057783482.1`	Pfam	`PF00149`	Metallophos	Domain	54	247	1.7e-51	176.2	Calcineurin-like phosphoesterase
`XP_057783483.1`	Pfam	`PF16891`	STPPase_N	Family	6	52	2.7e-19	70.1	Serine-threonine protein phosphatase N-terminal domain
`XP_057783483.1`	Pfam	`PF00149`	Metallophos	Domain	54	247	1.6e-51	176.2	Calcineurin-like phosphoesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927500.1
GCGGGGCGCCACACGCATAAGCACACAGAGCCCGGAGGGGTAAACGCCATTTCAAAACTATAAAGAATTGCTAACAAAATAGTAATCCACATTCCACAACACGCCCACTTGAAAGGCTAAAGCCAAAGTCTTCCATTCAAAAACACTCCAAAAACGCGCACTCTCGCTTTATTCCCTCCCACCCTTCTCTTCTCAATTTCATTTTCCTATACAAAACTTCAACTTCTCGCGATTTTATGATAGTTTTAGCCAAGAAGAAA...

XM_057927499.1
CAAAACTATAAAGAATTGCTAACAAAATAGTAATCCACATTCCACAACACGCCCACTTGAAAGGCTAAAGCCAAAGTCTTCCATTCAAAAACACTCCAAAAACGCGCACTCTCGCTTTATTCCCTCCCACCCTTCTCTTCTCAATTTCATTTTCCTATACAAAACTTCAACTTCTCGCGATTTTATGATAGTTTTAGCCAAGAAGAAACAGAAATCAGATGGATTCAGCTGCTTTGGATGATATAATCAATCGACTGCTT...

CDS

2 records

下载 CDS FASTA

LOC131001185
ATGGATTCAGCTGCTTTGGATGATATAATCAATCGACTGCTTGAGGTCAAAGGGAGGCCTGGGAAACAAGTGCAGCTGTCGGAGTCGGAGATGAGAAAGCTTTGTTTCCAATCGAAAGAAATTCTCCTGCACCAGCCTAATCTTCTTGAGCTTGAAGCACCCATTAAAATCTGTGGGGATATTCATGGCCAATATTCTGATCTTCTTAGACTTTTCGAATATGGCGGGTCACCCCCAAAATCAAACTACTTGTTCCTGGG...

Protein

2 records

下载 Protein FASTA

XP_057783482.1
MDSAALDDIINRLLEVKGRPGKQVQLSESEMRKLCFQSKEILLHQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGSPPKSNYLFLGDYVDRGKQSLETICLMLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDGKILCMHGGLSPDLDNLDQIRNLQRPADVPETGLLCDLLWSDPSRDVRGWGVNDRGVSYTFGAETVKEFLQKHDLDLICRAHQVVEDGYEFFADRQLV...

XP_057783483.1
MDSAALDDIINRLLEVKGRPGKQVQLSESEMRKLCFQSKEILLHQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGSPPKSNYLFLGDYVDRGKQSLETICLMLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDGKILCMHGGLSPDLDNLDQIRNLQRPADVPETGLLCDLLWSDPSRDVRGWGVNDRGVSYTFGAETVKEFLQKHDLDLICRAHQVVEDGYEFFADRQLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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