Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001644`

染色体: Chr08 坐标: 13647050-13650026 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001644`
名称	SmilChr08G001644
描述	serine/threonine-protein phosphatase PP1-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	13647050 - 13650026 / `+`

ID 对照

NCBI Gene ID	`LOC131001187`
GeneID	`131001187`
locus_tag	`-`
NCBI Name	`LOC131001187`
原始查询	`LOC131001187`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	serine/threonine-protein phosphatase PP1-like
产物	serine/threonine-protein phosphatase PP1-like
Arabidopsis	`AT2G39840` (TOPP4) type one serine/threonine protein phosphatase 4 [Source:NCBI gene (formerly Entrezgene);Acc:818571] identity=84.6; qcov=1; evalue=1.24e-159; confidence=high
Rice	`Os03g0268000` (OsPP1) - identity=87; qcov=1; evalue=5.14e-163; confidence=high
GO	GO:0004722 (protein serine/threonine phosphatase activity); GO:0005634 (nucleus); GO:0005737 (cytoplasm)
KEGG	smil03015 (mRNA surveillance pathway - Salvia miltiorrhiza (redroot sage)); smil04519 (Cadherin signaling - Salvia miltiorrhiza (redroot sage))
Pfam	PF00149 (Metallophos); PF16891 (STPPase_N)
InterPro	-
eggNOG	-
NR	GeneID:131001187

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057783484.1`
2	Nucleus	细胞核	1.00000	`XP_057783485.1`
3	Midbody	Midbody	0.80000	`XP_057783484.1`
4	Cytosol	细胞质基质	0.80000	`XP_057783485.1`
5	Chromosome	染色体	0.20000	`XP_057783484.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:13647489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B23,B81,B87,C18,C46
`Chr8:13648792`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B119,B64,C10,C38
`Chr8:13648905`	`A`	`AGT`	2bp_insertion	stop_gained,frameshift_variant	1	C38
`Chr8:13648905`	`A`	`AGT`	2bp_insertion	CDS_variant	1	C38
`Chr8:13648906`	`TCC`	`T`	2bp_deletion	frameshift_variant	1	C38
`Chr8:13648906`	`TCC`	`T`	2bp_deletion	CDS_variant	1	C38
`Chr8:13649167`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B23,B81,B87,C18,C46
`Chr8:13649242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr8:13649432`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr8:13649462`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B23,B81,B87,C18,C46
`Chr8:13649613`	`AAG`	`A`	2bp_deletion	frameshift_variant	1	B37
`Chr8:13649613`	`AAG`	`A`	2bp_deletion	CDS_variant	1	B37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783484.1

328 aa

164

328

STPPase_N

Metallophos

PF16891 STPPase_N 6-52 aa PF00149 Metallophos 54-247 aa

XP_057783485.1

246 aa

123

246

STPPase_N

Metallophos

PF16891 STPPase_N 6-52 aa PF00149 Metallophos 54-245 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783484.1`	Pfam	`PF16891`	STPPase_N	Family	6	52	3e-21	76.3	Serine-threonine protein phosphatase N-terminal domain
`XP_057783484.1`	Pfam	`PF00149`	Metallophos	Domain	54	247	2.2e-51	175.8	Calcineurin-like phosphoesterase
`XP_057783485.1`	Pfam	`PF16891`	STPPase_N	Family	6	52	1.3e-21	77.5	Serine-threonine protein phosphatase N-terminal domain
`XP_057783485.1`	Pfam	`PF00149`	Metallophos	Domain	54	245	2.6e-51	175.6	Calcineurin-like phosphoesterase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927501.1
TGAGGTAGACAAAGGGAAAATTCTTGACTCTTCTAAAACGTCTGCAAAGTCGCCCTCCACACTCTCTGTGCGTCCTCTCTCTCTCTCTCTCTCCCTCTCCATAAACGCACAGTGGGGTTAGCGAAAAAAGAGGTGATTTCAAAACGGAAAAGAGGATAATGATAACAACAAGCCACACCCAGTAGAAAAGAAGAAGGGAATTAGATGGACTCAGCGGCGCTTGATGATATAATAAACCGATTGCTTGAGGTTAAAGGGAG...

XM_057927502.1
TGAGGTAGACAAAGGGAAAATTCTTGACTCTTCTAAAACGTCTGCAAAGTCGCCCTCCACACTCTCTGTGCGTCCTCTCTCTCTCTCTCTCTCCCTCTCCATAAACGCACAGTGGGGTTAGCGAAAAAAGAGGTGATTTCAAAACGGAAAAGAGGATAATGATAACAACAAGCCACACCCAGTAGAAAAGGTTTAAAGCTAAATTCTTCCATTCAAAACACTCCAGCAACACGCACGCCCACTTTATTCTTCTCTCACCC...

CDS

2 records

下载 CDS FASTA

LOC131001187
ATGGACTCAGCGGCGCTTGATGATATAATAAACCGATTGCTTGAGGTTAAAGGGAGGCCCGGGAAGCAGGTGCAGCTGTCGGAGTCGGAGATCAGACGGCTCTGCTTGCAGTCTAAAGAAATTTTTATGCATCAGCCTAATCTTCTTGACCTTGAAGCGCCCATTAAGATTTGTGGGGATATTCATGGCCAGTACTCTGATCTTCTTAGACTTTTCGAATATGGTGGATTGCCCCCAAAATCGAATTACTTATTCTTGGG...

Protein

2 records

下载 Protein FASTA

XP_057783484.1
MDSAALDDIINRLLEVKGRPGKQVQLSESEIRRLCLQSKEIFMHQPNLLDLEAPIKICGDIHGQYSDLLRLFEYGGLPPKSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDEKILCMHGGLSPDLHDLNQIRNLQRPTDVPETGLLCDLLWSDPSKDVKGWGMNDRGVSYTFGQDKVTEFLQKHDLDLICRAHQVVEDGYEFFADRQLV...

XP_057783485.1
MDSAALDDIINRLLEVKGRPGKQVQLSESEIRRLCLQSKEIFMHQPNLLDLEAPIKICGDIHGQYSDLLRLFEYGGLPPKSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASVNRIYGFYDECKRRFNVRLWKVFTDCFNCLPVAALIDEKILCMHGGLSPDLHDLNQIRNLQRPTDVPETGLLCDLLWSDPSKDVKGWGMNDRGVSYTFGQDKVTEFLQKHDLDLICRAHQV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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