Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001684`

染色体: Chr08 坐标: 14073377-14084832 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001684`
名称	SmilChr08G001684
描述	uncharacterized SmilChr08G001684
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	14073377 - 14084832 / `+`

ID 对照

NCBI Gene ID	`LOC131001228`
GeneID	`131001228`
locus_tag	`-`
NCBI Name	`LOC131001228`
原始查询	`LOC131001228`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821932]; symbol=AT3G23530; hit=AT3G23530; species=arabidopsis; confidence=high
产物	Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821932]; symbol=AT3G23530; hit=AT3G23530; species=arabidopsis; confidence=high
Arabidopsis	`AT3G23530` (AT3G23530) Cyclopropane-fatty-acyl-phospholipid synthase [Source:NCBI gene (formerly Entrezgene);Acc:821932] identity=71.6; qcov=1; evalue=0; confidence=high
Rice	`Os12g0267200` - identity=62.1; qcov=0.919; evalue=0; confidence=high
GO	GO:0008168 (methyltransferase activity); GO:0016491 (oxidoreductase activity)
KEGG	-
Pfam	PF00890 (FAD_binding_2); PF01593 (Amino_oxidase); PF02353 (CMAS); PF05175 (MTS); PF08241 (Methyltransf_11); PF08242 (Methyltransf_12); PF12831 (FAD_oxidored); PF13450 (NAD_binding_8); PF13489 (Methyltransf_23); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31)
InterPro	-
eggNOG	-
NR	GeneID:131001228

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.80000	`XP_057783535.1`
2	Endoplasmic reticulum membrane	内质网膜	0.60000	`XP_057783535.1`
3	Lipid droplet	脂滴	0.20000	`XP_057783535.1`
4	Nucleus	细胞核	0.00000	`XP_057783535.1`
5	Chromosome	染色体	0.00000	`XP_057783535.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:14079910`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B123,B24
`Chr8:14080009`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B12,B123,B24
`Chr8:14080242`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B123,B24
`Chr8:14080391`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A1,B106
`Chr8:14080451`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B23,B81,B87,C18,C46
`Chr8:14080741`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B12,B123,B24
`Chr8:14080757`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B115,C44,C53
`Chr8:14080935`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B23,B81,B87,C18,C46
`Chr8:14081243`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B73
`Chr8:14081428`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B24
`Chr8:14082828`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B136,B45,B62,B77
`Chr8:14083365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,B80

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783535.1

865 aa

432

865

FAD_binding_2

FAD_oxidored

NAD_binding_8

Amino_oxidase

CMAS

MTS

Methyltransf_23

Methyltransf_31

Methyltransf_25

Methyltransf_12

Methyltransf_11

PF00890 FAD_binding_2 3-39 aa PF12831 FAD_oxidored 3-39 aa PF13450 NAD_binding_8 5-69 aa PF01593 Amino_oxidase 10-273 aa PF02353 CMAS 571-838 aa PF05175 MTS 620-733 aa PF13489 Methyltransf_23 626-740 aa PF13847 Methyltransf_31 628-737 aa PF13649 Methyltransf_25 633-729 aa PF08242 Methyltransf_12 634-731 aa PF08241 Methyltransf_11 634-733 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783535.1`	Pfam	`PF00890`	FAD_binding_2	Domain	3	39	1e-05	25.7	FAD binding domain
`XP_057783535.1`	Pfam	`PF12831`	FAD_oxidored	Family	3	39	3.1e-07	30.8	FAD dependent oxidoreductase
`XP_057783535.1`	Pfam	`PF13450`	NAD_binding_8	Domain	5	69	4.7e-16	59.5	NAD(P)-binding Rossmann-like domain
`XP_057783535.1`	Pfam	`PF01593`	Amino_oxidase	Domain	10	273	5.4e-20	72.8	Flavin containing amine oxidoreductase
`XP_057783535.1`	Pfam	`PF02353`	CMAS	Family	571	838	8.7e-81	271.9	Mycolic acid cyclopropane synthetase
`XP_057783535.1`	Pfam	`PF05175`	MTS	Domain	620	733	4.1e-07	30.4	Methyltransferase small domain
`XP_057783535.1`	Pfam	`PF13489`	Methyltransf_23	Domain	626	740	4.6e-10	40.2	Methyltransferase domain
`XP_057783535.1`	Pfam	`PF13847`	Methyltransf_31	Domain	628	737	3e-12	47.2	Methyltransferase domain
`XP_057783535.1`	Pfam	`PF13649`	Methyltransf_25	Domain	633	729	1.2e-16	61.9	Methyltransferase domain
`XP_057783535.1`	Pfam	`PF08242`	Methyltransf_12	Domain	634	731	4.5e-11	44.0	Methyltransferase domain
`XP_057783535.1`	Pfam	`PF08241`	Methyltransf_11	Domain	634	733	2.6e-13	51.1	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927552.1
GCAAATAAGACAGAAAATGGTGGGCAATTGCATTCCTCACAAGATTCAGACTTCAGAACCTTATCTTTAAGCGAAGTTCCCTCCAACTACTATTTCTTTCTAATACTCTTACCTCTCTCTCTCTCTCTCAAGTGAAGTGTGCACCTCTTGTTTCAGTCAACGTGCAGTATATACATACATATATATACAACTGTAATGCAGTTAATTTGCCATTAATTTCAAGGTAGTAATTAAGTAATCAAGACCAGAAACGTGGAAGA...

CDS

1 records

下载 CDS FASTA

LOC131001228
ATGAGAGTGGCTGTGGTGGGAGGCGGCGTGAGTGGTCTGGTTGCGGCATATGTGGCGGCGGAGGGCGGCGTGGAGGTGGTGCTCTATGAGAAGGAAGATTACTTAGGCGGCCATGCCAAGACTGTTGATGTTGATGACACTTCTCTTGACCTTGGATTTATGGTTTTCAATCGAGTTACTTATCCAAACATGATGGAATTCTTCGAGAATGTTGGAGTTGAGATGGAGGTGTCGGACATGTCGTTCTCAGTGAGCTTAGA...

Protein

1 records

下载 Protein FASTA

XP_057783535.1
MRVAVVGGGVSGLVAAYVAAEGGVEVVLYEKEDYLGGHAKTVDVDDTSLDLGFMVFNRVTYPNMMEFFENVGVEMEVSDMSFSVSLDKGRGCEWGSRGGLSGLFAQKKNAFNPYFWNMLREIIKFKTDVLSYLQHLEDNPHIDRSQTLGNFVQSRGYSQLFQNAYLIPICGSIWSCSSEGVMSFSAYSILSFCRNHHLLQLFGRPQWLTVRWRSQNYVNKIKKVLESRGCQIRTNAGVCSVSGNDEGCIVSCKDGSEEAY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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