Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001689`

染色体: Chr08 坐标: 14100358-14102411 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001689`
名称	SmilChr08G001689
描述	peroxygenase-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	14100358 - 14102411 / `+`

ID 对照

NCBI Gene ID	`LOC131001233`
GeneID	`131001233`
locus_tag	`-`
NCBI Name	`LOC131001233`
原始查询	`LOC131001233`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	peroxygenase-like
产物	peroxygenase-like
Arabidopsis	`AT5G55240` (ATPXG2) PEROXYGENASE 2 [Source:NCBI gene (formerly Entrezgene);Acc:835617] identity=61.8; qcov=0.988; evalue=1.8e-108; confidence=high
Rice	`Os04g0511200` (EFA27) - identity=60; qcov=0.996; evalue=8.14e-105; confidence=high
GO	GO:0004497 (monooxygenase activity); GO:0005509 (calcium ion binding)
KEGG	smil00073 (Cutin, suberine and wax biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF05042 (Caleosin)
InterPro	-
eggNOG	-
NR	GeneID:131001233

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057783541.1`
2	Endoplasmic reticulum membrane	内质网膜	0.40000	`XP_057783541.1`
3	Lipid droplet	脂滴	0.20000	`XP_057783541.1`
4	Nucleus	细胞核	0.00000	`XP_057783541.1`
5	Chromosome	染色体	0.00000	`XP_057783541.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:14100763`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr8:14100794`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr8:14101240`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C23
`Chr8:14101620`	`A`	`AAT`	2bp_insertion	frameshift_variant	30	A14,A5,B100,B107,B117,B121,B133,B14,B27,B29,B30,B37,B38,B39,B48,B50,B66,B69,B8,B89,B9,B95,C16,C20,C40,C74,C78,C79,D3,D5
`Chr8:14101720`	`A`	`AAC`	2bp_insertion	frameshift_variant	13	A1,A6,B101,B106,B14,B25,B64,B71,C22,C27,C65,C80,D8
`Chr8:14101949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783541.1

263 aa

132

263

Caleosin

PF05042 Caleosin 62-152 aa PF05042 Caleosin 171-251 aa

XP_057783542.1

263 aa

132

263

Caleosin

PF05042 Caleosin 62-152 aa PF05042 Caleosin 171-251 aa

XP_057783543.1

241 aa

120

241

Caleosin

PF05042 Caleosin 62-229 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783541.1`	Pfam	`PF05042`	Caleosin	Family	62	152	1.1e-70	237.7	Caleosin related protein
`XP_057783541.1`	Pfam	`PF05042`	Caleosin	Family	171	251	1.1e-70	237.7	Caleosin related protein
`XP_057783542.1`	Pfam	`PF05042`	Caleosin	Family	62	152	1.1e-70	237.7	Caleosin related protein
`XP_057783542.1`	Pfam	`PF05042`	Caleosin	Family	171	251	1.1e-70	237.7	Caleosin related protein
`XP_057783543.1`	Pfam	`PF05042`	Caleosin	Family	62	229	6.8e-75	251.4	Caleosin related protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927558.1
ATTTGAGCAGAATTTATCCTTGGAATACTAGTTTTTGCTACAATGATGCAAAAAACTAGTAACCAATGGCATGTGAAATCAAAACTCTCTCCATTACGAAACTCTCAATTCTTGAAAATCCTTCAACTTTCGCACTCAAACAACAAAAATTCAGCAGATTTAAATAAAGAATGTCCAAAAGTCTTATTTTGCTGCAGAATAGGAAACTCTTGCGCGTCGTGACTTGCATTCTGCAACGCCATTTATGCTTCCAGGGAACT...

XM_057927560.1
TTTGAGCAGAATTTATCCTTGGAATACTAGTTTTTGCTACAATGATGCAAAAAACTAGTAACCAATGGCATGTGAAATCAAAACTCTCTCCATTACGAAACTCTCAATTCTTGAAAATCCTTCAACTTTCGCACTCAAACAACAAAAATTCAGCAGATTTAAATAAAGAATGTCCAAAAGTCTTATTTTGCTGCAGAATAGGAAACTCTTGCGCGTCGTGACTTGCATTCTGCAACGCCATTTATGCTTCCAGGGAACTG...

CDS

3 records

下载 CDS FASTA

LOC131001233
ATGGCAGCAGTTGAAGCGGAAAGAAATCCGGCCGTGTCGCCTGTGGCGCCGCTTGCGCCGGTGACTATGGAGCGCCCGGTGCGCACAGACCTCGAAACTTCAATTCCGAAGCCCTACTTGGTAAGAGGAATGGTTGCTGCTGATATGGAACACCCTGATGGAACTCCTGGGCGTATGCATCGTGACATGAGTGTCCTGCAGCAGCATTGTGCTTTCTTTGATCTAGACGACAACGGTATCATTTATCCATGGGAAACTTA...

Protein

3 records

下载 Protein FASTA

XP_057783541.1
MAAVEAERNPAVSPVAPLAPVTMERPVRTDLETSIPKPYLVRGMVAADMEHPDGTPGRMHRDMSVLQQHCAFFDLDDNGIIYPWETYDGLRRIGFHAVVSLVLAIFFNMGLSYPTLPGWLPSPFFPIYISNIHKAKHGSDTGTFDSEGRYARAYVSIPRPQHNKTTSSIFRFSPASFESIFSKHGRAFPDKLTLRELWNMTEANRDSFDIVGWIASKVEWGVLYFLARDGDGLLSKEAIRGLYDGSLFHYCARMHMQNKR...

XP_057783542.1
MAAVEAERNPAVSPVAPLAPVTMERPVRTDLETSIPKPYLVRGMVAADMEHPDGTPGRMHRDMSVLQQHCAFFDLDDNGIIYPWETYDGLRRIGFHAVVSLVLAIFFNMGLSYPTLPGWLPSPFFPIYISNIHKAKHGSDTGTFDSEGRYARAYVSIPRPQHNKTTSSIFRFSPASFESIFSKHGRAFPDKLTLRELWNMTEANRDSFDIVGWIASKVEWGVLYFLARDGDGLLSKEAIRGLYDGSLFHYCARMHMQNKR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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