Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001699`

染色体: Chr08 坐标: 14201091-14205077 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001699`
名称	SmilChr08G001699
描述	uncharacterized SmilChr08G001699
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	14201091 - 14205077 / `-`

ID 对照

NCBI Gene ID	`LOC131001240`
GeneID	`131001240`
locus_tag	`-`
NCBI Name	`LOC131001240`
原始查询	`LOC131001240`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) [Source:NCBI gene (formerly Entrezgene);Acc:817899]; symbol=AT2G33360; hit=AT2G33360; species=arabidopsis; confidence=low
产物	cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) [Source:NCBI gene (formerly Entrezgene);Acc:817899]; symbol=AT2G33360; hit=AT2G33360; species=arabidopsis; confidence=low
Arabidopsis	`AT2G33360` (AT2G33360) cadherin EGF LAG seven-pass G-type receptor, putative (DUF3527) [Source:NCBI gene (formerly Entrezgene);Acc:817899] identity=34; qcov=0.917; evalue=3.56e-72; confidence=low
Rice	`Os03g0139200` - identity=36.8; qcov=0.672; evalue=9.61e-61; confidence=medium
GO	-
KEGG	-
Pfam	PF12043 (DUF3527)
InterPro	-
eggNOG	-
NR	GeneID:131001240

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057783550.1`
2	Cytoplasm	细胞质	0.40000	`XP_057783550.1`
3	Nucleus	细胞核	0.20000	`XP_057783550.1`
4	Chromosome	染色体	0.00000	`XP_057783550.1`
5	Centromere	着丝粒	0.00000	`XP_057783550.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:14201701`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B98,C43,C45
`Chr8:14202046`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A6,B71,C80
`Chr8:14202250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B98,C43,C45
`Chr8:14202344`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,C46
`Chr8:14202597`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,B34
`Chr8:14202721`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr8:14203199`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B136,B51,B61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783550.1

603 aa

302

603

DUF3527

PF12043 DUF3527 254-590 aa

XP_057783551.1

603 aa

302

603

DUF3527

PF12043 DUF3527 254-590 aa

XP_057783552.1

603 aa

302

603

DUF3527

PF12043 DUF3527 254-590 aa

XP_057783553.1

603 aa

302

603

DUF3527

PF12043 DUF3527 254-590 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783550.1`	Pfam	`PF12043`	DUF3527	Family	254	590	1.9e-111	373.7	Domain of unknown function (DUF3527)
`XP_057783551.1`	Pfam	`PF12043`	DUF3527	Family	254	590	1.9e-111	373.7	Domain of unknown function (DUF3527)
`XP_057783552.1`	Pfam	`PF12043`	DUF3527	Family	254	590	1.9e-111	373.7	Domain of unknown function (DUF3527)
`XP_057783553.1`	Pfam	`PF12043`	DUF3527	Family	254	590	1.9e-111	373.7	Domain of unknown function (DUF3527)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057927568.1
ATAGACATCACATGTATTAGAAGCCAGAAAAGGGTCCACCATTTCTTTCTTTTTGGGCTCTCGTTTGTTTTTTCATGGCCGTGTCGGTTTCCGTGTTCGCGTATGCACTCACCTTTTGCTCCCTAGTGGGCGTATGACTTCTGCCCTCATCGTGCGTACCAGCTCACACCCCCCCCCCCTCTCTCTCCTATCTTTCTCTCTCTAGAAGCAGCGTATACTAAGTGTGCCATTTCCGTTTCCGAAGCATTAAAAAATTAGAG...

XM_057927567.1
ATAGACATCACATGTATTAGAAGCCAGAAAAGGGTCCACCATTTCTTTCTTTTTGGGCTCTCGTTTGTTTTTTCATGGCCGTGTCGGTTTCCGTGTTCGCGTATGCACTCACCTTTTGCTCCCTAGTGGGCGTATGACTTCTGCCCTCATCGTGCGTACCAGCTCACACCCCCCCCCCCTCTCTCTCCTATCTTTCTCTCTCTAGAAGCAGCGTATACTAAGTGTGCCATTTCCGTTTCCGAAGCATTAAAAAATTAGAG...

CDS

4 records

下载 CDS FASTA

LOC131001240
ATGGAATGCCCAAGTACGAACTTGGGGAAAGACAGTGGTGAGGAAGAAAATGAAGTACTGTGTGCTATTGAATGTCTAAAATCCAATCGAGAAACTGTCGTTCCGAAAAGATGCAGAAAAAACATAGCGCCTGGGAAGACACAGATACTCAGTATTAGGAGGTCGAGAGCTAGTGCAACTTGCAGGGAGTTGTTCCTGCAGAACATTCACGCCTCACGAAATAATATCCCTAAGCATATTATCACCTTTGATGAAAAGTA...

Protein

4 records

下载 Protein FASTA

XP_057783550.1
MECPSTNLGKDSGEEENEVLCAIECLKSNRETVVPKRCRKNIAPGKTQILSIRRSRASATCRELFLQNIHASRNNIPKHIITFDEKYAIRCLQLIRNFAVRAAARNFSSKVDIFPDHTSHLAYIEDRSSSNMAIEYPLVGGTEVIVNSTGDWTIGTVSGSQTMINILKSPLLQQFGSLDANFVKTNFLGRSEHFDFAGSVKATDNVAPNVEKEVKFLDHRYASAPLHRREASVSSTSSSFSDQSSSSGSGISFQGMLQCT...

XP_057783551.1
MECPSTNLGKDSGEEENEVLCAIECLKSNRETVVPKRCRKNIAPGKTQILSIRRSRASATCRELFLQNIHASRNNIPKHIITFDEKYAIRCLQLIRNFAVRAAARNFSSKVDIFPDHTSHLAYIEDRSSSNMAIEYPLVGGTEVIVNSTGDWTIGTVSGSQTMINILKSPLLQQFGSLDANFVKTNFLGRSEHFDFAGSVKATDNVAPNVEKEVKFLDHRYASAPLHRREASVSSTSSSFSDQSSSSGSGISFQGMLQCT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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