Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001703`

染色体: Chr08 坐标: 14249117-14251279 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001703`
名称	SmilChr08G001703
描述	plasmodesmata-located protein 2-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	14249117 - 14251279 / `+`

ID 对照

NCBI Gene ID	`LOC131001244`
GeneID	`131001244`
locus_tag	`-`
NCBI Name	`LOC131001244`
原始查询	`LOC131001244`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plasmodesmata-located protein 2-like
产物	plasmodesmata-located protein 2-like
Arabidopsis	`AT1G04520` (PDLP2) plasmodesmata-located protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:839502] identity=61.5; qcov=1.04; evalue=7.26e-129; confidence=high
Rice	`Os03g0140500` - identity=50.4; qcov=0.913; evalue=1.49e-78; confidence=high
GO	GO:0009506 (plasmodesma); GO:0010497 (plasmodesmata-mediated intercellular transport); GO:0046739 (transport of virus in multicellular host)
KEGG	-
Pfam	PF01657 (Stress-antifung)
InterPro	-
eggNOG	-
NR	GeneID:131001244

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057783558.1`
2	Cell wall	细胞壁	0.20000	`XP_057783558.1`
3	Nucleus	细胞核	0.00000	`XP_057783558.1`
4	Chromosome	染色体	0.00000	`XP_057783558.1`
5	Centromere	着丝粒	0.00000	`XP_057783558.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783558.1

305 aa

152

305

Stress-antifung

PF01657 Stress-antifung 41-133 aa PF01657 Stress-antifung 154-239 aa

XP_057783559.1

300 aa

150

300

Stress-antifung

PF01657 Stress-antifung 41-133 aa PF01657 Stress-antifung 154-239 aa

XP_057783560.1

298 aa

149

298

Stress-antifung

PF01657 Stress-antifung 41-133 aa PF01657 Stress-antifung 154-239 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783558.1`	Pfam	`PF01657`	Stress-antifung	Family	41	133	2.5e-28	99.3	Salt stress response/antifungal
`XP_057783558.1`	Pfam	`PF01657`	Stress-antifung	Family	154	239	2.5e-28	99.3	Salt stress response/antifungal
`XP_057783559.1`	Pfam	`PF01657`	Stress-antifung	Family	41	133	2.4e-28	99.4	Salt stress response/antifungal
`XP_057783559.1`	Pfam	`PF01657`	Stress-antifung	Family	154	239	2.4e-28	99.4	Salt stress response/antifungal
`XP_057783560.1`	Pfam	`PF01657`	Stress-antifung	Family	41	133	2.3e-28	99.5	Salt stress response/antifungal
`XP_057783560.1`	Pfam	`PF01657`	Stress-antifung	Family	154	239	2.3e-28	99.5	Salt stress response/antifungal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057927575.1
TCTTTTCTTCCTTCCCAACAGGCGCGCACAGCCCAGCAAGCACCCACCCACCCAGAGAGGAATATTTTTCCTCTACTTCTTGAATTATTTTATTCAAATTATTTAATTCTCATTATCTTCAAAATTCAAACAAGGATAAAATTATAAGAGAGGAGCATAGTTGTAACTCAATTATCAAAGGGATATTTCACATTAGTAGTCTAGCACACAGCTCTTCTTGTGTACAGAGAAAAGGTAATCCCTCTTCATTTGTGCAAATA...

XM_057927576.1
TCTTTTCTTCCTTCCCAACAGGCGCGCACAGCCCAGCAAGCACCCACCCACCCAGAGAGGAATATTTTTCCTCTACTTCTTGAATTATTTTATTCAAATTATTTAATTCTCATTATCTTCAAAATTCAAACAAGGATAAAATTATAAGAGAGGAGCATAGTTGTAACTCAATTATCAAAGGGATATTTCACATTAGTAGTCTAGCACACAGCTCTTCTTGTGTACAGAGAAAAGGTAATCCCTCTTCATTTGTGCAAATA...

CDS

3 records

下载 CDS FASTA

LOC131001244
ATGGGTTTAACCAGAAACCCCTCCAGATTTCTCCCTCTTCTTCTCCTCATTTTAACCTCTCTTCACCTCATCCATCCCTCCAAATCTGCAGCTGACTTGACCAGCATAGTGTACAAGGGCTGTGCAAAGCAGTCTTTATCAGATCCGACAGGGGTGTATTCTCAAGCACTCTCCTCCTTGTATGGCACCCTTCTCTCACAATCCTCAAAGTCCAAGTTCTACAAGACTTCAACTGGCAGTGGGCAGTCTTCAATATCTGG...

Protein

3 records

下载 Protein FASTA

XP_057783558.1
MGLTRNPSRFLPLLLLILTSLHLIHPSKSAADLTSIVYKGCAKQSLSDPTGVYSQALSSLYGTLLSQSSKSKFYKTSTGSGQSSISGLFQCRGDLSNVDCYSCVSRLPILIDKLCGKPIAARMQLYGCYMLYEVAGFAQISGMEMLYKSCSGTNVGGAGFEEKRDTALNSLENGMSGGIGGFFTTSYEAVYVLGQCEGDVGASDCVECVKNAVQKAQVECGSSISGQIYLHKCFISYSFYPNGIPKKSSSASYSSSSSSS...

XP_057783559.1
MGLTRNPSRFLPLLLLILTSLHLIHPSKSAADLTSIVYKGCAKQSLSDPTGVYSQALSSLYGTLLSQSSKSKFYKTSTGSGQSSISGLFQCRGDLSNVDCYSCVSRLPILIDKLCGKPIAARMQLYGCYMLYEVAGFAQISGMEMLYKSCSGTNVGGAGFEEKRDTALNSLENGMSGGIGGFFTTSYEAVYVLGQCEGDVGASDCVECVKNAVQKAQVECGSSISGQIYLHKCFISYSFYPNGIPKKSSSASYSSSSSSS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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