Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001707`

染色体: Chr08 坐标: 14277072-14281681 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001707`
名称	SmilChr08G001707
描述	3-isopropylmalate dehydratase large subunit, chloroplastic-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	14277072 - 14281681 / `-`

ID 对照

NCBI Gene ID	`LOC131001249`
GeneID	`131001249`
locus_tag	`-`
NCBI Name	`LOC131001249`
原始查询	`LOC131001249`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	3-isopropylmalate dehydratase large subunit, chloroplastic-like
产物	3-isopropylmalate dehydratase large subunit%2C chloroplastic-like
Arabidopsis	`AT4G13430` (IIL1) isopropyl malate isomerase large subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:826975] identity=79.1; qcov=0.986; evalue=0; confidence=high
Rice	`Os02g0125100` - identity=78.2; qcov=0.998; evalue=0; confidence=high
GO	GO:0003861 (3-isopropylmalate dehydratase activity); GO:0008652 (amino acid biosynthetic process); GO:0051539 (4 iron, 4 sulfur cluster binding)
KEGG	smil00290 (Valine, leucine and isoleucine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00660 (C5-Branched dibasic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil00966 (Glucosinolate biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF00330 (Aconitase)
InterPro	-
eggNOG	-
NR	GeneID:131001249

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057783567.1`
2	Chloroplast stroma	叶绿体基质	0.60000	`XP_057783567.1`
3	Mitochondrion	线粒体	0.20000	`XP_057783568.1`
4	Nucleus	细胞核	0.00000	`XP_057783567.1`
5	Chromosome	染色体	0.00000	`XP_057783567.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:14277273`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B74,C2
`Chr8:14277306`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B100
`Chr8:14277558`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C58
`Chr8:14279630`	`C`	`CA`	1bp_insertion	frameshift_variant	1	C39
`Chr8:14279630`	`C`	`CA`	1bp_insertion	CDS_variant	1	C39
`Chr8:14279940`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A5,B105,B80
`Chr8:14280675`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,B104
`Chr8:14280820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B117

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783567.1

511 aa

256

511

Aconitase

PF00330 Aconitase 91-360 aa PF00330 Aconitase 364-501 aa

XP_057783568.1

510 aa

255

510

Aconitase

PF00330 Aconitase 90-359 aa PF00330 Aconitase 363-500 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783567.1`	Pfam	`PF00330`	Aconitase	Family	91	360	4.8e-83	280.4	Aconitase family (aconitate hydratase)
`XP_057783567.1`	Pfam	`PF00330`	Aconitase	Family	364	501	4.8e-83	280.4	Aconitase family (aconitate hydratase)
`XP_057783568.1`	Pfam	`PF00330`	Aconitase	Family	90	359	4.7e-83	280.4	Aconitase family (aconitate hydratase)
`XP_057783568.1`	Pfam	`PF00330`	Aconitase	Family	363	500	4.7e-83	280.4	Aconitase family (aconitate hydratase)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927584.1
CTGGTTAGAAACTTTGTATTTGGACAGTCGCGTGTATAATCTGACAACCAAATATGAGTTAGAAACCATTAAATAGTGTAATTCTAATGAGCAGATCAAATCAAACTTACCAATTTTTCACGTATACAACAAGCTCAAGTGAACTACAGTGAAGCCGCCACGAATATGACAAAGAATAAAACTCTAAAAAAAAAAATGAAAAGAGAGAGATAGACAAAGCAAATTTGTATTCAAACATCAGATCAAATGTCAGTCTGTTT...

XM_057927585.1
AAACTTACCAATTTTTCACGTATACAACAAGCTCAAGTGAACTACAGTGAAGCCGCCACGAATATGACAAAGAATAAAACTCTAAAAAAAAAAATGAAAAGAGAGAGATAGACAAAGCAAATTTGTATTCAAACATCAGATCAAATGTCAGTCTGTTTTAGTCACTAAAACGCACAAATCGCCTTACACTCTGAAGCATGGCTTCTTCTCCTGTCGCCCCAACCTTATCGCCAATCCTACAAAAGAATGTTAGCTTTTCA...

CDS

2 records

下载 CDS FASTA

LOC131001249
ATGGCTTCTTCTCCTGTCGCCCCAACCTTATCGCCAATCCTACAAAAGAATGTTAGCTTTTCAGCTTCATGTTCACAGGCGTCTTCACTTCGAATTTCGGCGGCGGCTACCAAGAAACATGCCTCCAAAAAGATAGTGTCTGTGATCACTCCTCAGCAGTCCAAGCGCGAGCCTTCCACAACTGGCACGGTGAAGACTGGAATGACAATGACAGAAAAGCTACTTGCAAGAGCTTCAGAGAAAACGCAATTGAGCCCTGG...

LOC131001249
ATGGCTTCTTCTCCTGTCGCCCCAACCTTATCGCCAATCCTACAAAAGAAGAATGTTAGCTTTTCAGCTTCATGTTCACAGGCGTCTTCACTTCGAATTTCGGCGGCGGCTACCAAGAAACATGCCTCCAAAAAGATAGTGTCTGTGATCACTCCTCAGCAGTCCAAGCGCGAGCCTTCCACAACTGGCACGGTGAAGACTGGAATGACAATGACAGAAAAGCTACTTGCAAGAGCTTCAGAGAAAACGCAATTGAGCCC...

Protein

2 records

下载 Protein FASTA

XP_057783567.1
MASSPVAPTLSPILQKKNVSFSASCSQASSLRISAAATKKHASKKIVSVITPQQSKREPSTTGTVKTGMTMTEKLLARASEKTQLSPGDNVWANVDVLMTHDVCGPAAFGVFKREFGENAKVWDREKVVVIPDHYIFTTDELANRNVDTLREFCIEQNIKYFYDIKDLADFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGITDAGFVLGTGKLLLKVPPTLRFILDGEMPDYVLAKDLILQI...

XP_057783568.1
MASSPVAPTLSPILQKNVSFSASCSQASSLRISAAATKKHASKKIVSVITPQQSKREPSTTGTVKTGMTMTEKLLARASEKTQLSPGDNVWANVDVLMTHDVCGPAAFGVFKREFGENAKVWDREKVVVIPDHYIFTTDELANRNVDTLREFCIEQNIKYFYDIKDLADFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGITDAGFVLGTGKLLLKVPPTLRFILDGEMPDYVLAKDLILQII...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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