当前解析结果
SmilChr08G001709| 统一新 Gene ID | SmilChr08G001709 |
|---|---|
| 名称 | SmilChr08G001709 |
| 描述 | uncharacterized SmilChr08G001709 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 14301265 - 14318101 / - |
| NCBI Gene ID | LOC131001254 |
|---|---|
| GeneID | 131001254 |
| locus_tag | - |
| NCBI Name | LOC131001254 |
| 原始查询 | LOC131001254 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819586]; symbol=AT3G04310; hit=AT3G04310; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819586]; symbol=AT3G04310; hit=AT3G04310; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G04310 (AT3G04310)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:819586] identity=31.4; qcov=0.643; evalue=1.85e-18; confidence=low |
| Rice | Os01g0680600- identity=26.9; qcov=0.727; evalue=9.99e-15; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001254 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057783575.1 |
| 2 | Chloroplast membrane | 叶绿体膜 | 0.60000 | XP_057783575.1 |
| 3 | Chloroplast stroma | 叶绿体基质 | 0.20000 | XP_057783575.1 |
| 4 | Chloroplast thylakoid | 类囊体 | 0.20000 | XP_057783575.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057783575.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:14316451 |
A |
AC |
1bp_insertion | frameshift_variant | 162 | A10,A11,A14,A15,A16,A18,A2,A20,A22,A23,A25,A3,A4,A5,A6,A7,A8,A9,B1,B100,B101,B102,B104,B105,B107,B108,B109,B11,B110,B111,B112,B113,B114,B115,B117,B119,B12,B121,B122,B124,B126,B128,B129,B130,B131,B134,B135,B136,B137,B138,B139,B140,B15,B16,B2,B20,B21,B23,B24,B26,B32,B33,B34,B35,B36,B40,B41,B42,B43,B45,B47,B49,B5,B50,B52,B53,B55,B57,B58,B60,B62,B63,B64,B65,B66,B68,B69,B7,B70,B71,B72,B76,B77,B78,B8,B80,B81,B82,B84,B85,B89,B93,B94,B99,C13,C14,C15,C18,C19,C2,C20,C21,C23,C25,C26,C27,C3,C31,C32,C33,C36,C37,C4,C42,C44,C45,C46,C49,C5,C50,C51,C53,C54,C55,C60,C61,C62,C63,C64,C65,C67,C68,C70,C71,C72,C73,C75,C78,C80,C81,C83,C84,C85,C86,C87,D1,D10,D11,D2,D5,D8,D9 |
Chr8:14316459 |
C |
CT |
1bp_insertion | frameshift_variant | 48 | A11,A18,A3,A4,A5,A7,A9,B1,B101,B107,B108,B109,B11,B115,B135,B21,B23,B24,B40,B49,B57,B58,B7,B76,B78,B8,B80,B89,B93,C13,C19,C2,C20,C21,C26,C31,C32,C36,C42,C49,C53,C60,C61,C68,C72,C78,C83,C87 |
Chr8:14316465 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B55 |
Chr8:14316470 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr8:14316593 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | A9,C49 |
Chr8:14316593 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A9,C49 |
Chr8:14316645 |
T |
TC |
1bp_insertion | frameshift_variant | 2 | B25,B88 |
Chr8:14316645 |
T |
TC |
1bp_insertion | CDS_variant | 2 | B25,B88 |
Chr8:14316679 |
G |
A |
EMS_canonical_SNV | stop_gained | 11 | A2,B113,B16,B36,B94,C14,C19,C25,C3,C65,D11 |
Chr8:14316688 |
G |
A |
EMS_canonical_SNV | stop_gained | 10 | A5,B1,B101,B135,B58,B7,B78,B8,C31,C42 |
Chr8:14316790 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B88,C24,C71 |
Chr8:14316821 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B122 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。