Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001733`

染色体: Chr08 坐标: 14571580-14577390 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001733`
名称	SmilChr08G001733
描述	uncharacterized SmilChr08G001733
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	14571580 - 14577390 / `-`

ID 对照

NCBI Gene ID	`LOC131001277`
GeneID	`131001277`
locus_tag	`-`
NCBI Name	`LOC131001277`
原始查询	`LOC131001277`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839412]; symbol=AT1G04790; hit=AT1G04790; species=arabidopsis; confidence=low
产物	RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839412]; symbol=AT1G04790; hit=AT1G04790; species=arabidopsis; confidence=low
Arabidopsis	`AT1G04790` (AT1G04790) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839412] identity=39.6; qcov=0.424; evalue=1.44e-53; confidence=low
Rice	`Os01g0673900` - identity=64.6; qcov=0.063; evalue=2.7e-19; confidence=weak
GO	-
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131001277

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783605.1`
2	Chromosome	染色体	0.00000	`XP_057783605.1`
3	Centromere	着丝粒	0.00000	`XP_057783605.1`
4	Chromatin	染色质	0.00000	`XP_057783605.1`
5	Telomere	端粒	0.00000	`XP_057783605.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:14571868`	`C`	`T`	EMS_canonical_SNV	stop_gained	2	C40,C48
`Chr8:14571868`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C40,C48
`Chr8:14572307`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr8:14572971`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A9
`Chr8:14573625`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C76
`Chr8:14573657`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr8:14574683`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B82,C20,C48
`Chr8:14574963`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B82,C20,C48
`Chr8:14575021`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A20,B82,C20,C48
`Chr8:14575276`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C85
`Chr8:14575671`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A13,A4,B124,B95
`Chr8:14575858`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B25

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783605.1

761 aa

380

761

zf-rbx1

zf-RING_2

zf-RING_11

zf-C3HC4

zf-C3HC4_2

PF12678 zf-rbx1 712-757 aa PF13639 zf-RING_2 715-757 aa PF17123 zf-RING_11 716-743 aa PF00097 zf-C3HC4 716-756 aa PF13923 zf-C3HC4_2 716-756 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783605.1`	Pfam	`PF12678`	zf-rbx1	Domain	712	757	4.4e-08	34.0	RING-H2 zinc finger domain
`XP_057783605.1`	Pfam	`PF13639`	zf-RING_2	Domain	715	757	1.8e-12	48.0	Ring finger domain
`XP_057783605.1`	Pfam	`PF17123`	zf-RING_11	Domain	716	743	4.9e-08	33.3	RING-like zinc finger
`XP_057783605.1`	Pfam	`PF00097`	zf-C3HC4	Domain	716	756	1.2e-07	32.2	Zinc finger, C3HC4 type (RING finger)
`XP_057783605.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	716	756	2e-08	34.6	Zinc finger, C3HC4 type (RING finger)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927622.1
CGCTTGTGATTTTTAAAATTCGACGGAATCACGGGCCCTTTTGATCCGGATCAGGATCCGACCCATATGAATCTGAACCGTTTTACGCTTGCAGACATCTGAAACTTTTGATAATTGGAAAAGAGGGTGAAAATTTTGGAGATGGAATTTTTGTTGTATGATTGATTATCATACCCTTACACTTTACTTTGCTGTTACCGTTCTCTCTTCACATTAAGCTCCCTGGAGTTTCCGAAAATTTCTTGTAAGAGAAAGACAAT...

CDS

1 records

下载 CDS FASTA

LOC131001277
ATGGATCATATGGACATCGATCAGATAGTTGAGGTTCCAGACACTCCCGATAGATTAGCTAAACATGGAATCAATGGGAGGAATGGCGTTATAACTGAAAATCAACGTTCATCAATGCCCCGTCTTGGGCAGAAGATTTTTCTTGAAGAGGGTTCTAGAGATCAGCCAATGATCATTGACAGTGGAAGCCGAGGGCTGTCCCTGCATCCTTCAAAACGTCCTAGCAATTTCAAGAATTCTCAGTGTCCCAATACATCTGC...

Protein

1 records

下载 Protein FASTA

XP_057783605.1
MDHMDIDQIVEVPDTPDRLAKHGINGRNGVITENQRSSMPRLGQKIFLEEGSRDQPMIIDSGSRGLSLHPSKRPSNFKNSQCPNTSASFSLVSSPSSRNGNLYRKVVTERKPSYLTHDSMHKSLESVRPSYPSKSSSSSQDDGISDPIEWSFLAARKNASSSTVPGNNETSDLPTGTSSHDLANLVNTSCNGNEEKKKPSRGGLSFGPGERVGFGGINKKKPENGVVSSNPIAPPRVNKQKRLVRNGCISPINIAKAEQL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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