Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001741`

染色体: Chr08 坐标: 14623599-14634311 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001741`
名称	SmilChr08G001741
描述	pre-mRNA-processing protein 40C
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	14623599 - 14634311 / `+`

ID 对照

NCBI Gene ID	`LOC131001286`
GeneID	`131001286`
locus_tag	`-`
NCBI Name	`LOC131001286`
原始查询	`LOC131001286`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pre-mRNA-processing protein 40C
产物	pre-mRNA-processing protein 40C
Arabidopsis	`AT3G19840` (PRP40C) pre-mRNA-processing protein 40C [Source:NCBI gene (formerly Entrezgene);Acc:821521] identity=54.8; qcov=0.935; evalue=0; confidence=high
Rice	`Os10g0485000` (OsMed35_1) - identity=52.9; qcov=0.933; evalue=0; confidence=high
GO	GO:0003712 (transcription coregulator activity); GO:0005634 (nucleus); GO:0070063 (RNA polymerase binding)
KEGG	smil03040 (Spliceosome - Salvia miltiorrhiza (redroot sage))
Pfam	PF00397 (WW); PF01846 (FF)
InterPro	-
eggNOG	-
NR	GeneID:131001286

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057783613.1`
2	Chromosome	染色体	0.00000	`XP_057783613.1`
3	Centromere	着丝粒	0.00000	`XP_057783613.1`
4	Chromatin	染色质	0.00000	`XP_057783613.1`
5	Telomere	端粒	0.00000	`XP_057783613.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:14625486`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr8:14625916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B47,B55
`Chr8:14626063`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C60
`Chr8:14626262`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C23,C24,C71
`Chr8:14626280`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C23,C24,C71,C85
`Chr8:14627835`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A5,B80
`Chr8:14628660`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C23,C24,C71
`Chr8:14629261`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C82
`Chr8:14629463`	`G`	`GAA`	2bp_insertion	frameshift_variant	3	C23,C24,C71
`Chr8:14629463`	`G`	`GAA`	2bp_insertion	CDS_variant	3	C23,C24,C71
`Chr8:14629465`	`TGG`	`T`	2bp_deletion	frameshift_variant	3	C23,C24,C71
`Chr8:14629465`	`TGG`	`T`	2bp_deletion	CDS_variant	3	C23,C24,C71

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783613.1

874 aa

437

874

PF00397 WW 261-287 aa PF01846 FF 481-526 aa PF01846 FF 545-593 aa PF01846 FF 615-661 aa PF01846 FF 804-833 aa

XP_057783614.1

817 aa

408

817

PF00397 WW 204-230 aa PF01846 FF 424-469 aa PF01846 FF 488-536 aa PF01846 FF 558-604 aa PF01846 FF 747-776 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783613.1`	Pfam	`PF00397`	WW	Domain	261	287	1.1e-15	58.1	WW domain
`XP_057783613.1`	Pfam	`PF01846`	FF	Family	481	526	1.1e-51	173.4	FF domain
`XP_057783613.1`	Pfam	`PF01846`	FF	Family	545	593	1.1e-51	173.4	FF domain
`XP_057783613.1`	Pfam	`PF01846`	FF	Family	615	661	1.1e-51	173.4	FF domain
`XP_057783613.1`	Pfam	`PF01846`	FF	Family	804	833	1.1e-51	173.4	FF domain
`XP_057783614.1`	Pfam	`PF00397`	WW	Domain	204	230	9.4e-16	58.3	WW domain
`XP_057783614.1`	Pfam	`PF01846`	FF	Family	424	469	7.3e-52	174.0	FF domain
`XP_057783614.1`	Pfam	`PF01846`	FF	Family	488	536	7.3e-52	174.0	FF domain
`XP_057783614.1`	Pfam	`PF01846`	FF	Family	558	604	7.3e-52	174.0	FF domain
`XP_057783614.1`	Pfam	`PF01846`	FF	Family	747	776	7.3e-52	174.0	FF domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057927630.1
TCGATTACTCGAATCCCTAATTTATACCGATTATTTATGTCATCTATATTTTTATTCAATAAAAAAAATAAAATTTCTCGTAATTTGGCTCGCAATTTTCAGCAACCCCAGTTTTTTCCACTGTCAGTTCCCCGTTTCGCCAAATTTTGAAAGATTTTACGTGCTGGAACTCAAGGCTGTTGAGCAAGGTCTTCCCGAAGTAGGAAAGAGTGCTCAGTCTTCTGCATAATCACTGATACCTCCTACTTCGTCAATCCCAT...

XM_057927631.1
ATTTATACCGATTATTTATGTCATCTATATTTTTATTCAATAAAAAAAATAAAATTTCTCGTAATTTGGCTCGCAATTTTCAGCAACCCCAGTTTTTTCCACTGTCAGTTCCCCGTTTCGCCAAATTTTGAAAGATTTTACGTGCTGGAACTCAAGGCTGTTGAGCAAGGTCTTCCCGAAGTAGGAAAGAGTGCTCAGTCTTCTGCATAATCACTGATACCTCCTACTTCGTCAATCCCATCAAATCCTAAATAATTTTC...

CDS

2 records

下载 CDS FASTA

LOC131001286
ATGGCCCATCCAGGCCCTCCTTTTTTTGTTCCTGAAGGAAATTCATCCCATGCTGGAAATTATTCTTTCAACGGAAATGTGCTACCAAAGCAAACTGATCAATCACAAACAACTAATGTAAGAGCTGATGGTGCTCAAGAAGTGGGAGCAACTACTTCTGCGTCAGCAGTTATGCAATCTGCTTCTCAGGCCCTACCTAATGCCAGTCCTGCAGCACATTTTGCACCCAACAATTTTAGTAATATGAATTCGTGGATGCC...

LOC131001286
ATGCAATCTGCTTCTCAGGCCCTACCTAATGCCAGTCCTGCAGCACATTTTGCACCCAACAATTTTAGTAATATGAATTCGTGGATGCCTGCTCCAGCAACATTTCAAGTTCCTGCAAGGATGGCTAGAGCTCCTGCGACCCCTGGCCCCCCTGGAATTGCTTCTTCCATACCTTCTCCCTCAAGTTCAACCATTCTGGCTTCATCTCAAGATTCCACTGCACTAAGAACGTTCATGCCCGGTGCTCCTGTTCTTCCCAA...

Protein

2 records

下载 Protein FASTA

XP_057783613.1
MAHPGPPFFVPEGNSSHAGNYSFNGNVLPKQTDQSQTTNVRADGAQEVGATTSASAVMQSASQALPNASPAAHFAPNNFSNMNSWMPAPATFQVPARMARAPATPGPPGIASSIPSPSSSTILASSQDSTALRTFMPGAPVLPNPPIQHNAVAIYPSAPPQVAPPGPWLSHQHIGGFARPSFSPYGAAVPGPYPMPIRSTAPQSVSYSDIQPPGVSPAVSAMGVPTTSFTAGRQSSIGSEQAELPPGIETKDEAPKEKLD...

XP_057783614.1
MQSASQALPNASPAAHFAPNNFSNMNSWMPAPATFQVPARMARAPATPGPPGIASSIPSPSSSTILASSQDSTALRTFMPGAPVLPNPPIQHNAVAIYPSAPPQVAPPGPWLSHQHIGGFARPSFSPYGAAVPGPYPMPIRSTAPQSVSYSDIQPPGVSPAVSAMGVPTTSFTAGRQSSIGSEQAELPPGIETKDEAPKEKLDAWTAHRTETGIVYYYNALTGESTYEKPSDFKGESDKASVQPTPVSWEKLSGTDWTLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器