当前解析结果
SmilChr08G001749| 统一新 Gene ID | SmilChr08G001749 |
|---|---|
| 名称 | SmilChr08G001749 |
| 描述 | E3 ubiquitin-protein ligase PRT1 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 14715187 - 14719858 / + |
| NCBI Gene ID | LOC131001292 |
|---|---|
| GeneID | 131001292 |
| locus_tag | - |
| NCBI Name | LOC131001292 |
| 原始查询 | LOC131001292 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | E3 ubiquitin-protein ligase PRT1 |
| 产物 | E3 ubiquitin-protein ligase PRT1 |
| Arabidopsis | AT3G24800 (PRT1)proteolysis 1 [Source:NCBI gene (formerly Entrezgene);Acc:822078] identity=39.1; qcov=1.07; evalue=1.61e-93; confidence=medium |
| Rice | Os02g0621500- identity=47.3; qcov=0.894; evalue=4.58e-98; confidence=high |
| GO | GO:0008270 (zinc ion binding); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity) |
| KEGG | - |
| Pfam | PF00097 (zf-C3HC4); PF00569 (ZZ); PF13445 (zf-RING_UBOX); PF13920 (zf-C3HC4_3); PF13923 (zf-C3HC4_2); PF14634 (zf-RING_5) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001292 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057783628.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057783628.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057783628.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783628.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783628.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:14716199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B99,C87 |
Chr8:14716213 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | C16,C40 |
Chr8:14716213 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C16,C40 |
Chr8:14716311 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B29 |
Chr8:14718278 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr8:14718410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr8:14718446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B72 |
Chr8:14718607 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C13 |
Chr8:14718607 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C13 |
Chr8:14718633 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,C81 |
Chr8:14719669 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | D3 |
Chr8:14719669 |
TC |
T |
1bp_deletion | CDS_variant | 1 | D3 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783628.1PF13920
zf-C3HC4_3 19-66 aa
PF13923
zf-C3HC4_2 179-216 aa
PF14634
zf-RING_5 179-217 aa
PF13445
zf-RING_UBOX 180-214 aa
PF00097
zf-C3HC4 180-216 aa
PF00569
ZZ 284-322 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783628.1 |
Pfam | PF13920 |
zf-C3HC4_3 | Domain | 19 | 66 | 1.2e-11 | 44.9 | Zinc finger, C3HC4 type (RING finger) |
XP_057783628.1 |
Pfam | PF13923 |
zf-C3HC4_2 | Domain | 179 | 216 | 3.8e-10 | 40.1 | Zinc finger, C3HC4 type (RING finger) |
XP_057783628.1 |
Pfam | PF14634 |
zf-RING_5 | Domain | 179 | 217 | 1.1e-07 | 32.4 | zinc-RING finger domain |
XP_057783628.1 |
Pfam | PF13445 |
zf-RING_UBOX | Domain | 180 | 214 | 2.4e-09 | 37.8 | RING-type zinc-finger |
XP_057783628.1 |
Pfam | PF00097 |
zf-C3HC4 | Domain | 180 | 216 | 1.1e-05 | 25.9 | Zinc finger, C3HC4 type (RING finger) |
XP_057783628.1 |
Pfam | PF00569 |
ZZ | Domain | 284 | 322 | 2.1e-09 | 37.8 | Zinc finger, ZZ type |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。