Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr08G001751`

染色体: Chr08 坐标: 14724371-14731611 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr08G001751`
名称	SmilChr08G001751
描述	26S proteasome non-ATPase regulatory subunit 1 homolog A-like
染色体 / SeqID	Chr08 / NC_080394.1
坐标与链方向	14724371 - 14731611 / `+`

ID 对照

NCBI Gene ID	`LOC131001295`
GeneID	`131001295`
locus_tag	`-`
NCBI Name	`LOC131001295`
原始查询	`LOC131001295`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	26S proteasome non-ATPase regulatory subunit 1 homolog A-like
产物	26S proteasome non-ATPase regulatory subunit 1 homolog A-like
Arabidopsis	`AT2G32730` (AT2G32730) 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit [Source:NCBI gene (formerly Entrezgene);Acc:817833] identity=81.8; qcov=1.01; evalue=0; confidence=high
Rice	`Os08g0224700` (OsRpn2a) - identity=74.6; qcov=0.99; evalue=0; confidence=high
GO	GO:0000502 (proteasome complex); GO:0005634 (nucleus); GO:0008540 (proteasome regulatory particle, base subcomplex); GO:0030234 (enzyme regulator activity); GO:0034515 (proteasome storage granule); GO:0042176 (regulation of protein catabolic process); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process)
KEGG	smil03050 (Proteasome - Salvia miltiorrhiza (redroot sage))
Pfam	PF01851 (PC_rep); PF13646 (HEAT_2); PF18004 (RPN2_C); PF21505 (RPN2_N)
InterPro	-
eggNOG	-
NR	GeneID:131001295

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057783630.1`
2	Nucleus	细胞核	0.80000	`XP_057783630.1`
3	Chromosome	染色体	0.00000	`XP_057783630.1`
4	Centromere	着丝粒	0.00000	`XP_057783630.1`
5	Chromatin	染色质	0.00000	`XP_057783630.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr8:14724735`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B37,D8
`Chr8:14725834`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B139,B35,C61
`Chr8:14728423`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C82,C85
`Chr8:14728541`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B44,D2
`Chr8:14729677`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B138,D7
`Chr8:14730094`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr8:14730178`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A15,B58,B62,C72,D9
`Chr8:14730291`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B140,C82,C85
`Chr8:14730883`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr8:14731111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B29
`Chr8:14731173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057783630.1

1009 aa

504

1009

RPN2_N

PC_rep

HEAT_2

PC_rep

RPN2_C

PF21505 RPN2_N 10-282 aa PF01851 PC_rep 504-537 aa PF13646 HEAT_2 627-719 aa PF01851 PC_rep 678-711 aa PF18004 RPN2_C 813-965 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057783630.1`	Pfam	`PF21505`	RPN2_N	Repeat	10	282	2.9e-89	300.1	26S proteasome subunit RPN2, N-terminal domain
`XP_057783630.1`	Pfam	`PF01851`	PC_rep	Repeat	504	537	1.4e-31	108.0	Proteasome/cyclosome repeat
`XP_057783630.1`	Pfam	`PF13646`	HEAT_2	Repeat	627	719	1.8e-17	64.1	HEAT repeats
`XP_057783630.1`	Pfam	`PF01851`	PC_rep	Repeat	678	711	1.4e-31	108.0	Proteasome/cyclosome repeat
`XP_057783630.1`	Pfam	`PF18004`	RPN2_C	Domain	813	965	8.5e-49	166.2	26S proteasome regulatory subunit RPN2 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057927647.1
AGCCAGAGCAGATGACGGGCCTAGGCTGCTCCAAACGGTGTTTTTAACTTTGTCCCTCACACAAGAAACGCTAGTAGAAAAAGAAAGTAAAATGGACCAAACAAGCTCAAAATAATTCCAACAAAGAATTACACTTTGATTAATTTCCCCTTTTATTATTTGGGTTAGTTTCTTTTTAGCTTTGTTTGTCGCCTTCGATTCCATTGCATCTCAAGGGAAACCCTTTATCCCCAAATCCTATTAGATCGAAGCCCTAATTT...

CDS

1 records

下载 CDS FASTA

LOC131001295
ATGGCTGCTGCGGCGACGACGGTGAGCTCCGCCGGTGGGCTACTGGCGATGCTGAACGAGAGCCACCCCGCTCTTAAGATACACGCGCTGTCCAATCTCAATGCCTTCGTCAACTACTTCTGGCCGGAGATCTCCACCTCTGTCCCAATCATAGAAAGTTTATATGAAGATGAAGAATTTGAACAGAGGCATCTAGCGGCCTTGCTCGTTTCCAAGGTTTTTTATTATCTGGGTGAACTTAATGACTCACTATCATATGC...

Protein

1 records

下载 Protein FASTA

XP_057783630.1
MAAAATTVSSAGGLLAMLNESHPALKIHALSNLNAFVNYFWPEISTSVPIIESLYEDEEFEQRHLAALLVSKVFYYLGELNDSLSYALGADHQFDVSEDSDYVHTLLAKAIDEYASLKTKAAEANYELAVIDPRLEAIVERMLDKCIADGKYQQAIGVAIECRRLDKLEEAVIRSDNVHATINYCIDVSHNFVYRREYRLEVLRLLVKVYQQLPSPDYLSMCQRLMFLDEPESVASILEKLLQSENADDALLAYQIAFDL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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