当前解析结果
SmilChr08G001756| 统一新 Gene ID | SmilChr08G001756 |
|---|---|
| 名称 | SmilChr08G001756 |
| 描述 | uncharacterized SmilChr08G001756 |
| 染色体 / SeqID | Chr08 / NC_080394.1 |
| 坐标与链方向 | 14764817 - 14770083 / - |
| NCBI Gene ID | LOC131001299 |
|---|---|
| GeneID | 131001299 |
| locus_tag | - |
| NCBI Name | LOC131001299 |
| 原始查询 | LOC131001299 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) [Source:NCBI gene (formerly Entrezgene);Acc:839386]; symbol=AT1G04900; hit=AT1G04900; species=arabidopsis; confidence=high |
| 产物 | NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) [Source:NCBI gene (formerly Entrezgene);Acc:839386]; symbol=AT1G04900; hit=AT1G04900; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G04900 (AT1G04900)NADH dehydrogenase ubiquinone complex I, assembly factor-like protein (DUF185) [Source:NCBI gene (formerly Entrezgene);Acc:839386] identity=73.6; qcov=0.95; evalue=0; confidence=high |
| Rice | Os01g0911900- identity=64.6; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0005739 (mitochondrion); GO:0035243 (protein-arginine omega-N symmetric methyltransferase activity) |
| KEGG | - |
| Pfam | PF02636 (Methyltransf_28) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001299 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057783636.1 |
| 2 | Mitochondrion matrix | 线粒体基质 | 0.20000 | XP_057783636.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057783636.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057783636.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057783636.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr8:14765186 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,A7,B135,B40,C33 |
Chr8:14765213 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B71,C80 |
Chr8:14765226 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C9 |
Chr8:14765247 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr8:14765440 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C11,C69,D4 |
Chr8:14766356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr8:14766363 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A10,A7,B135,B40,C33 |
Chr8:14767179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A8,B68 |
Chr8:14769569 |
T |
TA |
1bp_insertion | frameshift_variant | 1 | B65 |
Chr8:14769569 |
T |
TA |
1bp_insertion | CDS_variant | 1 | B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057783636.1PF02636
Methyltransf_28 123-379 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783636.1 |
Pfam | PF02636 |
Methyltransf_28 | Family | 123 | 379 | 4.8e-31 | 108.8 | Putative S-adenosyl-L-methionine-dependent methyltransferase |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。