当前解析结果
SmilChr01G004314| 统一新 Gene ID | SmilChr01G004314 |
|---|---|
| 名称 | SmilChr01G004314 |
| 描述 | receptor protein kinase-like protein ZAR1 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 61312743 - 61316905 / - |
| NCBI Gene ID | LOC131001317 |
|---|---|
| GeneID | 131001317 |
| locus_tag | - |
| NCBI Name | LOC131001317 |
| 原始查询 | LOC131001317 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | receptor protein kinase-like protein ZAR1 |
| 产物 | receptor protein kinase-like protein ZAR1 |
| Arabidopsis | AT3G57830 (AT3G57830)Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:824952] identity=56.1; qcov=1.04; evalue=0; confidence=high |
| Rice | Os08g0506400 (OsRLCK257)- identity=47.2; qcov=1.06; evalue=5.06e-171; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131001317 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057783665.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057783665.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057783665.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057783665.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057783665.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:61313037 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr1:61313050 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B67 |
Chr1:61313116 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A8 |
Chr1:61313147 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C26,D11 |
Chr1:61313407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A6,B27,C47 |
Chr1:61313409 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C26 |
Chr1:61315606 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A6 |
Chr1:61315817 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B9,C44 |
Chr1:61315861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C12 |
Chr1:61316079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B105,B75,C1,C51,C67 |
Chr1:61316286 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C50,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057783665.1PF08263
LRRNT_2 24-65 aa
PF00560
LRR_1 95-116 aa
PF00560
LRR_1 118-140 aa
PF00560
LRR_1 146-164 aa
PF07714
PK_Tyr_Ser-Thr 326-612 aa
PF00069
Pkinase 353-607 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057783665.1 |
Pfam | PF08263 |
LRRNT_2 | Family | 24 | 65 | 3.4e-11 | 43.9 | Leucine rich repeat N-terminal domain |
XP_057783665.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 95 | 116 | 1.4e-10 | 39.9 | Leucine Rich Repeat |
XP_057783665.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 118 | 140 | 1.4e-10 | 39.9 | Leucine Rich Repeat |
XP_057783665.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 146 | 164 | 1.4e-10 | 39.9 | Leucine Rich Repeat |
XP_057783665.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 326 | 612 | 1.4e-23 | 84.3 | Protein tyrosine and serine/threonine kinase |
XP_057783665.1 |
Pfam | PF00069 |
Pkinase | Domain | 353 | 607 | 5.5e-18 | 66.0 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。